Fragaria vesca (woodland strawberry): 101301435
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Entry
101301435 CDS
T02666
Name
(RefSeq) ATP-dependent helicase rhp16
KO
K15083
DNA repair protein RAD16
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fve03400
]
101301435
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
101301435
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
DEAD
zf-RING_2
Prok-RING_4
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
101301435
NCBI-ProteinID:
XP_011463393
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Position
LG1:10002282..10006998
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AA seq
905 aa
AA seq
DB search
MELRSRKRLSGADTDGIEQRVEEEEEVGGSESGGVSLSEVEAYSSDSGLGSGSDSEGEDN
LFDVETVINLNDRPKGKLKEPLRGKGEVKQKKKRGQPSSDEEVVDYDIFDDHNFNELQLI
PQQALEIDFLGLTTKSKRRKSKSGRRKPILMWNIWEDEHNKWIDENFSEDFDLDAQNNVV
NEVVESPSDLIMPLLRYQKEWLAWALRQEESQTRGGILADEMGMGKTIQAIALVLAKREI
NWTLNEPQPSTGLRHIKGTLVVCPVVAVSQWVSEIERFTSKGSTKILVYHGANREKSSKQ
FLDYDFVITTYSIVEADYRKHVMPPKEKCPYCGKLFYETKMTVHLKYFCGPNAIRTEKQS
KQQRKTHLPSKKTLESSNEKISGSSGTKKGAHKRKSKLHKDDDMDSEDVALNMNKGNSVL
HAVKWNRIILDEAHYIKSRRCNTAKAVLALESTYKWALSGTPLQNRVGELYSLVRFLQLV
PYSYYLCKDCDCRTLDHSSTSQCSNCPHSSVRHFCWWNKNVATPIQLFGNTYSGKRAMIL
LKHKILKNIVLRRTKKGRAADLALPPRIVSLRKDTLDIKEQDYYESLYTDSQALFNTYVD
AGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSATAALRIENKANIDNSEKICGICHDPAED
QVVTACEHVFCKACLIDFSASLGQVSCPSCSKLLTVDLTTSVGAGNQTTKTTIKGFRSSS
ILNRIQLENFQTSTKIEALKEEIRFMVERDGSAKGIVFSQFTSFLDLIHYSLQKSGVNCV
QLVGSMTMSARDNAIKKFTEDPDCRIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQ
AQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLK
FLFVT
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggagctccgttctcgcaagaggctctccggcgccgataccgatggaattgagcaacgt
gtggaggaggaggaggaggttgggggtagcgagagtggtggagtctctttgtctgaggtg
gaagcctattcgtctgattcgggtttgggttcgggttctgatagtgaaggtgaagataac
ctatttgatgtggagacggttattaacttaaatgatagaccaaaaggcaaattgaaggag
cctttgcgagggaagggggaggtcaagcaaaagaagaaaagaggacaaccaagttcagat
gaggaagtggtggattatgacatttttgatgatcataattttaatgaattgcagcttatt
cctcaacaagcactcgaaatcgactttcttggcttgacaacgaaaagcaagagaaggaag
tcaaaatctggtcggcgaaagccaattcttatgtggaacatctgggaagatgagcataat
aaatggatcgatgagaatttctctgaggattttgatctcgatgctcagaataatgtggta
aatgaagttgttgagtcaccgtctgatttgattatgcctttgctgaggtatcagaaggag
tggttggcctgggctctaagacaggaagagtctcaaactagaggaggaatcctagcagat
gagatgggaatggggaagactattcaagcgattgcacttgtactggctaaacgggagatc
aactggacattaaatgaaccccaaccctctacaggcttgcgtcacattaaaggaaccctt
gtagtttgtcctgtggttgctgtaagccagtgggtaagtgagatagagcggtttacttcc
aaaggaagtacaaagatcctggtttatcatggagccaatagagagaagagttccaaacag
ttcctggattatgatttcgtcattacgacatactctattgttgaggctgattataggaag
catgtgatgcctccaaaagaaaagtgcccatattgtgggaagttgttttatgagacaaaa
atgactgttcacttgaaatacttttgtgggcctaatgcgatcagaactgagaagcagtct
aagcaacaaaggaaaacacatctgccatcaaagaagacgttagagtcttctaatgaaaag
atcagtggaagttcgggcacaaagaaaggagctcacaaaagaaaatcgaagctgcacaaa
gacgatgatatggattcagaagatgttgcactgaacatgaataaagggaattcggttttg
catgctgtgaagtggaaccggatcattttggatgaggcacattatataaaatctaggcgt
tgcaatactgcaaaagctgttcttgctttagagtctacgtataaatgggctctaagcggc
acgccccttcagaaccgtgttggagaactttactcattggtccgcttcttgcaattagtg
ccatactcatattacctgtgtaaggactgtgactgcagaactcttgatcatagttccaca
tcacagtgttcaaattgccctcatagttctgtcagacatttttgttggtggaataaaaat
gtggccacaccaatacaattatttggaaatacatatagtggaaaaagagccatgatatta
ctaaaacacaagatcttaaagaacatagtgctgcgacgaactaaaaagggaagggctgct
gaccttgcacttcctcctcgaatagtttcattgaggaaggataccttggatatcaaagaa
caagattattatgagtcattatatactgatagtcaggcattatttaacacatatgttgat
gcgggaactctgatgaataattatgctcacatctttgatcttctcacacgcttgcggcag
gctgttgatcatccttaccttgtcgtgtattctgcaactgctgcattaagaattgaaaac
aaggctaatattgataacagtgagaaaatatgtggcatttgtcatgatccagctgaagat
caagtggttactgcttgtgaacatgtcttctgcaaggcatgcttaatagatttttctgct
tccctgggacaagtttcatgcccttcatgctcgaaattgctcactgtggatctgacaaca
agtgtaggtgctggtaatcagactactaaaactaccattaaggggttcagatcctcgagc
attttgaacaggattcagcttgagaattttcagactagcacaaaaatagaagctttgaaa
gaagaaatcagattcatggttgaaagagatggttccgcaaagggaattgtttttagccag
ttcacatcattcttagatctcattcactactccttgcaaaagtcgggcgtcaactgcgtt
cagttggttggaagcatgaccatgtcagcaagggataatgctataaagaaattcactgag
gatccagattgcagaattttcttaatgagtttgaaagccggaggtgttgctcttaatctt
acagttgcatcacatgttttcttgatggacccatggtggaatccagctgtggagcgacaa
gcacaagatagaatccaccggatagggcagtacaaaccaatcagaattgtgagattcgtc
attgagaacacaattgaggagaggattttgaagctacaggagaagaaggagctagtgttt
gagggcaccattggtggttctagtgaggctctcgggaaattgactgaagctgacttgaaa
ttcttgttcgtcacctaa
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