Fuscovulum ytuae: QF092_02470
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Entry
QF092_02470 CDS
T09905
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fyt
Fuscovulum ytuae
Pathway
fyt03030
DNA replication
fyt03410
Base excision repair
fyt03420
Nucleotide excision repair
fyt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fyt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QF092_02470 (ligA)
03410 Base excision repair
QF092_02470 (ligA)
03420 Nucleotide excision repair
QF092_02470 (ligA)
03430 Mismatch repair
QF092_02470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fyt03032
]
QF092_02470 (ligA)
03400 DNA repair and recombination proteins [BR:
fyt03400
]
QF092_02470 (ligA)
Enzymes [BR:
fyt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QF092_02470 (ligA)
DNA replication proteins [BR:
fyt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QF092_02470 (ligA)
DNA repair and recombination proteins [BR:
fyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QF092_02470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QF092_02470 (ligA)
MMR (mismatch excision repair)
DNA ligase
QF092_02470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QF092_02470 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WGV16701
LinkDB
All DBs
Position
503391..505640
Genome browser
AA seq
749 aa
AA seq
DB search
MTDGKTIEQLSEAEARQELARLAEVIAAANRAYHSLDAPEISDADYDALKRRNAAIEARF
PQFKRADSPSEQVGGAVAEGFGEIRHEIRMLSLSNAFDEEEVAEFDNRVRSFLGMEAPIT
YVAEPKIDGLSLSLRYEGGVLVQAATRGDGEVGENVTENALTIADIPRRVEGAPAVMEVR
GEVYMAHADFAALNARQAAAGAKVFANPRNAAAGSLRQLDAAITAARPLRFFAYAWGALS
EPLASSQFAAIARLKALGFQTNPLTVLCDGPAALLAQYRRIEVMRATLGYDIDGVVYKVD
DLSLQARLGFRATTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLQPVTVGGVV
VSNATLHNEDYIAGRDSKGEAIRGGKDIRVGDWVQVYRAGDVIPKVADVDLARRPEGAVP
YVFPHRCPECGSEAVREEGDSVRRCTGGLICPAQAVERLVHFVSRAAFDIEGLGRKQVEM
FFADDLLPVKEPADIFTLAARDAANPLQKLRNREGFGEKSVANLWAAIEERRRIPLARLI
FALGMRHVGEVAAQDLARHYLTWDALVAAVDLARPAALAHRAADEAELEERAAAMVEGRR
ARVKDARDRAVAALAVPEAAKAAWTELITGDGIGPVLALSLSDTLANPEERASIARLVAY
LDVLPPEARATESPVAGLTVVFTGSLEKMTRAEAKARAEALGAKVAGSVSAKTDLLVAGP
GAGSKAKDAERLGVKMIDEDEWLALIGDA
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacggaaagaccatcgagcagctttccgaggccgaggcgcggcaggaacttgcc
cgtctggccgaggtgattgccgcagcgaaccgggcctatcacagcttggacgcgcccgag
atttcggatgcggattatgatgcattgaagcggcgcaacgctgccatcgaggcgcgtttc
ccccagttcaagcgtgccgatagccccagcgaacaggttggcggtgcggtggccgaaggc
tttggggagatccggcacgagatcaggatgctgtccctgtccaacgcctttgacgaggag
gaagtggcagagttcgacaaccgcgtccgatccttccttgggatggaggcgccgatcacc
tatgtcgcggaacccaagatcgatgggctgtcgctatccttgcgctatgagggtggggtt
ctggtgcaggccgccacgcggggcgatggcgaagtgggcgagaatgtcaccgaaaacgcg
ctgaccatcgcggatattccccgccgggtggagggcgcgcctgcggtgatggaggtgcgg
ggtgaggtctatatggcccatgccgattttgcggctctgaacgcgcggcaggcggcggcg
ggggcgaaggtctttgccaatccgcgcaatgcggcggcggggtcgctgcggcagttggat
gccgcgatcacggcggcgcgtccgctgcggttttttgcctatgcttggggggcactgtca
gagccgctggcaagctcacaattcgcggcaattgctcggctgaaagccttgggatttcag
acaaatcccttgacggtgctgtgtgatgggcctgccgccctgctcgcgcagtatcggcgg
atcgaggtgatgcgcgcaacgcttggctatgacatcgacggggtggtctacaaggtggat
gacctgtcgcttcaggcccggttggggttccgggccacgacgccacgctgggccatcgcg
cataaattccctgccgaactggcctggacgcggctggaggcaattgacattcaggtgggc
cgcaccggtgccctgtcgcccgtggcgcggcttcaacccgtcacagtggggggcgtggtc
gtgtcgaacgccaccttgcataatgaggattatatcgcgggccgcgacagcaagggagag
gcgatccgcggtggtaaggatatccgcgtgggcgattgggtgcaggtctatcgcgcaggc
gatgtgatcccgaaggtggcggatgtggaccttgcccgcaggcctgaaggggcggtgccc
tatgtctttccgcatcgctgcccggaatgcgggtccgaggctgtgcgggaagagggggat
tcggtgcgccgctgcacgggcgggctgatatgccccgcacaggcggtggagcgattggtg
catttcgtgtcgcgcgcggcctttgatattgagggactggggcgcaagcaggtggagatg
ttctttgccgatgatctgctgccggtgaaagagcctgcggacatctttacccttgccgca
agagatgccgccaaccctttgcaaaagctgcgcaatcgggaagggttcggcgagaagtcg
gtggccaatctgtgggctgcaatcgaggaacggcggcgtattcccttggcgcggctgatc
tttgccttggggatgcggcatgtgggtgaggtggcggcgcaggacctcgcgcggcactat
ctgacttgggacgcgttggtggcagccgtcgatctggcgcggcctgcggcgctggcccat
cgcgcggcggatgaggcggagttggaagaacgtgccgccgccatggtcgaggggcggcgg
gcaagggtgaaggacgcgcgggatcgcgcggtggcggcgctggccgtgccagaggcggcg
aaggctgcatggaccgagttgatcaccggggatgggatcgggccagtgctggcgctgtcc
ttgtcggacacgttggccaaccctgaagaacgcgcctcgattgcgcggttggtggcttat
cttgacgtcctgccgcccgaggcgcgggcgacggaatcgccggtggcggggctgacggtt
gtcttcaccgggagtttggaaaagatgacgcgggccgaggccaaggcgcgggccgaggcg
ttgggggccaaggttgccgggtcggtctcggccaagaccgatcttctggtggcaggtccc
ggcgcggggtcaaaggcgaaggatgcggaacgtttgggcgtgaagatgatcgacgaggac
gaatggctcgccctcatcggggatgcatga
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