Galbibacter sp. BG1: HX109_12810
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Entry
HX109_12810 CDS
T06675
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gaa
Galbibacter sp. BG1
Pathway
gaa03030
DNA replication
gaa03410
Base excision repair
gaa03420
Nucleotide excision repair
gaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HX109_12810 (ligA)
03410 Base excision repair
HX109_12810 (ligA)
03420 Nucleotide excision repair
HX109_12810 (ligA)
03430 Mismatch repair
HX109_12810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gaa03032
]
HX109_12810 (ligA)
03400 DNA repair and recombination proteins [BR:
gaa03400
]
HX109_12810 (ligA)
Enzymes [BR:
gaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HX109_12810 (ligA)
DNA replication proteins [BR:
gaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HX109_12810 (ligA)
DNA repair and recombination proteins [BR:
gaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HX109_12810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HX109_12810 (ligA)
MMR (mismatch excision repair)
DNA ligase
HX109_12810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HX109_12810 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
Auto_anti-p27
RNA_ligase
5_3_exonuc
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QLE02394
LinkDB
All DBs
Position
2955173..2957167
Genome browser
AA seq
664 aa
AA seq
DB search
MNIATKIASLRKELSQHNYNYYVLDSPEISDFEFDSKLKELQELEAAHPEYFDTNSPTVR
VGGMVTKNFETVVHTYRMYSLDNSYSKEDLEDWEKRIQRILGDVKVEFTCELKYDGASMS
LTYEDGLLVRAVTRGDGFQGDEVTNNVKTIRSVPLKLKADFPPKFDIRGEIILPLEGFAK
MNQERIEAGEDPYMNPRNTASGSLKLQDSAEVAKRPLECLLYNIVGENLGVSSQFESLVK
AKEWGFKVPEVAKLCKNTSEVLEFVDYWDQHRHELPYEIDGVVVKVNSFQHQEELGYTAK
APRWAMAYKFKAEQVSTSLESIAYQVGRTGAITPVANLKPVLLAGTTVKRASLHNADQIE
KLDVRINDEVFVEKGGEIIPKIVGIDFTKRSPDASPVDYIQNCPECNTPLIRKEGEAQHY
CPNTYGCPPQITGRIQHFISRKAMDIEGLGGETVELLFKEGLIDNYADLYTLTKEDVIPL
ERMAEKSAENLVKGVEKSKEIPFERVLFALGIRFVGETVAKKLAKEYKSIDALIQASAGE
LILVDEIGIKIAESVVEFFQNEKNIEIINRLREYGVQLEISAEQLENITEKFKGITFVVS
GVFEKVSRNELKKLIEDNSGKVASSISSKTSYVVAGDNMGPSKKEKAEKLNIPIISEDEF
LDML
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagccaccaagatagcatcgttgcgcaaagaactttctcaacataattacaat
tattacgttttagattctccagagatatcggattttgagtttgacagtaagttaaaagaa
ctccaagagctcgaagcagcgcatcccgaatatttcgatactaattcgccaaccgttcgt
gtgggcgggatggtgaccaaaaactttgaaacggttgttcatacctatcgcatgtattct
ttagataattcatattccaaagaagatttagaagattgggaaaagcgcattcaacgtatt
cttggggatgtgaaagtggaatttacctgtgaattgaaatacgacggcgcttcgatgagc
ttaacttacgaggatggtttgctggtgcgtgcagttacccgtggggacggatttcaaggg
gatgaggttaccaataatgtaaaaacaatccgatcggtgcctttaaaattgaaagctgat
tttccaccgaaatttgatattcgtggggaaattattttaccactggaaggctttgcaaaa
atgaaccaagaacgtatagaagcaggggaagatccctatatgaatccgcgtaacaccgcc
agtggtagtttaaaactgcaggatagcgccgaggtggctaaacgacctttggagtgcttg
ctgtataatattgttggtgaaaatttaggtgtttccagtcagtttgaaagcttggtcaaa
gcgaaagaatggggttttaaagtaccggaagttgcgaaactttgcaagaatacttcagaa
gtattggagtttgtggactattgggatcaacaccggcacgaactaccttatgaaatagat
ggagtagtggtaaaggtaaatagttttcagcatcaagaagaattgggctatacggctaag
gcaccgcgatgggccatggcttataaattcaaggcagaacaagtatctacatctttagaa
agcatcgcataccaagtaggaagaacgggtgccataacccctgttgccaatttaaaacct
gttttattggcaggaacaacggtaaaaagggcgtcgttgcacaatgcagatcaaatagaa
aaattggacgtgcgtattaacgatgaagtttttgttgaaaagggcggagagatcattccc
aaaattgtagggatcgattttaccaaacgatcaccagatgcatcgcctgtggattacatt
caaaattgcccagaatgtaatacgccactcattagaaaggaaggggaggcgcagcattat
tgtccgaacacctatggttgtccgccacaaattacgggtcgtatacagcattttatatcg
agaaaagctatggatattgaaggtttagggggcgagacggtggagttgctttttaaagaa
ggccttatcgataattatgcagatctttatacattgaccaaagaggatgtaataccgctt
gagcgaatggccgaaaaatcggcagaaaatttagtaaaaggagtagagaagtctaaagaa
attccttttgaaagagtattatttgctttgggaatacgttttgttggcgaaaccgtcgct
aaaaaattagcaaaggaatacaagtccatcgatgcacttattcaggcttctgcaggagaa
ttgattttggtggatgaaatagggataaaaattgcggaaagcgttgttgagttttttcag
aatgagaagaatatagaaattataaacagattaagggaatatggcgttcaactagaaata
tctgcggaacaacttgaaaatattactgaaaaatttaaaggtattactttcgtggtttcg
ggggtttttgagaaagtatctagaaacgaacttaagaaactaattgaagacaatagcggg
aaagtagcgtcgtccatatcttccaaaacgagctatgttgtcgctggggacaatatgggg
ccgagtaagaaagaaaaggcagagaaattgaacattcctataatttccgaagatgaattt
ttagatatgctgtaa
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