Gossypium arboreum (tree cotton): 108453657
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Entry
108453657 CDS
T05776
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108453657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108453657
Spliceosome [BR:
gab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108453657
Complex C
U5 SnRNP specific factors
108453657
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
Septin
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
108453657
NCBI-ProteinID:
XP_017607391
LinkDB
All DBs
Position
13:128611435..128617157
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AA seq
990 aa
AA seq
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MDDNLYDEFGNYIGPDIESDQGSEGEEEEDEELPDRHVQEEGEQSDGEAPDGVSNGWITA
ANDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNIKFEVGVK
DSSTYVSTQFLIGLMSNPGLIRNVALVGHLQHGKTVFMDMLVEQTHHMNTFDQNSEKHMR
YTDTRIDEQERRISIKAIPMSLVLEDSNGKSYLCNIMDTPGHVNFSDEMTAALRLADGAV
LIVDAAEGVMVNTERAIRHAIQERIPIVVVINKVDRLITELKLPPKDAYHKLRHTLEVIN
NHISAASTTAGNVPVIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGIPFDAEKFASRL
WGDIYHHPDTRAFKRKPPAGGGERSFVEFVLEPLYKIYSQVIGEHRKSVESTLAELGVTL
SNAAYKLNVRPLLRLACSTVFGSASGFTDLLVQHIPSPKDAAAKKVDHTYTGPKHSTIYK
AMVECDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIQTGQSLRVLGEGYSPDDEEDMT
IKEVTKLWIYQARYRIPISSAPPGSWVLIEGVDASIMKTATLCNMDLDEDVYIFRPLQFN
TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD
LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENG
VVSVDWSRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLGSVR
DSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIASEPLHRGSGQIIPTARRVAYSAFLMA
TPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGF
ETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGM
SEDVSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggatgataacttgtatgatgaatttggtaactatattggacctgatatcgagtcagac
caagggagtgaaggtgaggaagaagaagatgaagaacttcctgacaggcatgtccaagag
gagggagagcaatctgatggggaggctccagatggggtgtctaatggatggattacagct
gctaatgatgttgatatggataatcagattgttcttgctgaggacaagaagtattaccca
actgcggaagaggtttatggtgaggatgttgagaccttagttatggatgaagatgagcag
cctcttgagcaacctattatcaagcctgttaagaatatcaagtttgaggtcggagttaag
gattcttcaacttatgtgtcgacccagtttcttattggtttgatgtcaaacccaggtttg
atccgcaatgttgccctcgttggacacttgcagcatgggaagacggtgtttatggacatg
ttggttgagcaaacccaccatatgaacacgtttgatcaaaatagtgagaagcacatgaga
tacaccgatacaagaattgatgagcaagaaagaaggatatctattaaggccatcccgatg
tcacttgttcttgaggacagtaatgggaaatcctatctctgtaatatcatggacactcct
ggtcatgtgaatttttctgatgaaatgactgctgctcttaggcttgctgacggtgccgtg
ttaattgttgatgcagctgaaggagtgatggtaaatactgagagggctatacgccatgca
atacaggaacgcatacctattgtagttgttataaacaaggttgaccggctgataacagaa
cttaagttgccccccaaggatgcttatcataaactaaggcataccctggaagtaattaat
aaccatatatctgcagcctctacaaccgctggtaatgttccagttattgatcctgctgct
ggaaatgtttgttttgctagtgcaagtgcaggatggtccttcactttgcagtcatttgca
aaattatatgtgaaactacatggaattccatttgatgctgagaagtttgcatctcgactt
tggggtgatatttatcatcatcctgataccagggcttttaaaaggaaaccccctgctggc
ggaggagaacgatcatttgttgaatttgtgcttgaacccctttataagatatatagccag
gtgattggtgaacataggaagagtgtagagtcgactctcgcagagttgggtgtcactctt
agcaatgctgcttacaagttaaatgttaggcctttgctaaggctggcttgcagcacagtt
tttggttcagcctcaggcttcactgatttgctggttcaacacataccatcaccaaaggat
gctgcagctaagaaggttgatcacacttacacgggacctaaacattctacgatttacaag
gccatggtagaatgtgatccatctggtccccttatggtcaatgtgaccaaactatatccc
aagtccgattgtagtgtttttgatgcttttggtagggtttacagtggtagaattcaaact
gggcagtctttgagagtactgggagaaggctattcaccagatgacgaggaggacatgaca
ataaaagaagtaaccaaattatggatctaccaagctcgatacagaatacctataagcagt
gctcctcctggttcttgggttcttattgaaggtgttgatgcttcaattatgaaaactgcc
accctctgtaatatggatcttgatgaagatgtatacattttccggccgttacagtttaat
actcttcctgttgtaaaaacagctactgagcctttaaatcctagtgagttgcccaaaatg
gtggaggggcttcggaagattagcaaaagctatcctctagcaattactaaagttgaggaa
tctggtgagcacactatattaggtactggagagttgtacttggactcaattatgaaggac
cttagggagctttattcagaggtggaagttaaggtggcagatcctgttgtttcattctgt
gaaacagtggtggagtcttcatccatgaaatgctttgctgaaacacccaacaagaagaat
aaaataaccatgattgcagagccattggagagaggtcttgcagaggacattgagaatggt
gttgtaagtgttgactggagtcggaagcaacttggtgacttcttcaagacaaaatatgac
tgggatttgcttgctgcacgttccatctgggcatttggccctgataagcagggacctaac
attttattagatgatacactccctactgaggttgacaagggattgttgggatctgtcagg
gattctattgtccaaggatttcagtggggtgctcgagaaggacctctctgtgatgaacct
attagaaatgtgaagttcaaaatagttgatgcaaggattgcatctgaaccattgcatcga
ggatctggacagatcatacccacagctcgacgtgtggcctattcagctttccttatggcg
accccacggcttatggaacctgtatattatgtggagatacaaacaccaattgactgtgtc
tctgccatctacacggtgttgtctcgtaggcgtggtcatgttacagctgatgtgccacag
ccaggaaccccggcctatattgtgaaggcatttttacctgtgatagagtcattcggattt
gagacagacctgaggtaccacacacaaggtcaagccttttgtctctcagtattcgaccac
tgggccatagttcctggagaccctttggacaagagcattgttttgcgacctcttgaaccc
gcaccaatacagcaccttgctcgggagttcatggtgaagacaaggcgtagaaagggaatg
agtgaagatgtgagcatcaacaagttcttcgacgaggctatggtggtggagctagctcag
caggctgccgatcttcatcagcagatgatataa
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