KEGG   Gossypium arboreum (tree cotton): 108455119
Entry
108455119         CDS       T05776                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108455119
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gab03021]
    108455119
Enzymes [BR:gab01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     108455119
Transcription machinery [BR:gab03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     108455119
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 108455119
NCBI-ProteinID: XP_052877012
LinkDB
Position
11:complement(1881341..1891048)
AA seq 1492 aa
MKSKPMTSIETDLSEEQEVLAATMTGIKFNVSGDEDNEKMSVMEIVASSQVSDPKLGFPN
LRNHCTTCDARDLGHCEGHFGVIKFPYPIINPYYLSEVVQILNKICPGCKSIRKDLLIKC
LASCALNPFFLLPFILLLIISGRQGNSIDWYPPMTFKISSKELFKKSTIVVEVSEDSLMM
VRKRGRQALPADYWDFIPKDQQQEEDGLMKPRRRVLSHAKVHYLLKDVDPEFIKKFIQNV
DSIFLNCFPVTPNSHRVTEITHRSSNSQRLIFDERTRLYKRLVDFRGVANELSSHVLECL
KISKLFQEKPSNEDNELILALIRNKDPVSNMSGLRYMKNVLLGKRNDHCFRMVLTGNPNL
KPSEIGIPCPVAERLQIAEQLNKWNEERLKACCNLRILEKGEICIRREGTLVRIHHNEKI
RLGDIIYRPLNNGDIVLINRPPSIHQHSFIALSVKVLPVSSSVSINPLICSPFRGDFDGD
CLHGYVPQSINTRVELSELVSLNKQLINGQNGRNLLSLSHDSLSAAYLVNGEGVLLNLYE
MQQLEMFCPNRSPSPAIIKAPLLSNPVWTGKQLFSMLFPPELDYGFAPSDVVIRNGELIT
SSEGSSWFRDADGNLFESLIKNCRGKVLDFLHGAQEVLCEWLSMRGMSVSLLDLYLTSDS
NSRKNMMDEIFYGLQETELTCNFKQLMVDSYRDFLAGNNEEIDGFVSFDFERMCYEKQIS
APVNQASVDSFKQVFRDIQNLSYKYANKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQCSL
VPLSFRFPPKLSCSEWNDLKSQGLTQNGDDTVESATNFIPYAVVESSFMTGLNPLECFVH
SVTSRDSSFSDHADLPGTLSRRLMFFLRDLCASYDGTVRNAYGDQVVQFSYGSDKGTSTA
TSFANEIRSQGSILPDGTGGQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKRVLEC
GSRRRNSDQIMTLFFSDKLGKGRHCFEYAALEIKNYLERLIFSDIVSTVLITYSPQKSTE
NCFNPWVCHFHVCKDTMKRRRLSVHSIIGSLQMHCANAKKLWKINLPDIQVTSESCSQFG
MPNKDDRFCITVTIVEPSKKSHIELDVIQAIVLPSLLEAVVKGFPEIKKVQILWNDRFKV
SKSHKTSPGELYLRVAVTGGFSKTNLWGMLMNDCLPIMDLIDWTRSHPDDINQFCLAYGI
DSGSKFFLNNFKSAISDTGKTILNVHLHLVADCLSVTGEFVGLNSKGLRLRQEHAFVTSP
FMQACFSNPSASFVKAAKKGVSDDLQGTIDALSWGRVPRIGTGAQFDILYSMKDERITEP
VDVYKLLGNIDGSQKQDVEFEVPKACNFKSEKYVSELMDALGDSAFERLKNIETKILREF
LTLNDIQRLSRTLKDILHKSPIGHRLSGADWNSAMMALYFHPRRDEKVGSGAQEIKVGYH
PEHKNSRCFLLARTDGTIVDFSYHKCVIGALEVIAPDKVQSYKSKWSQSGNL
NT seq 4479 nt   +upstreamnt  +downstreamnt
atgaagtcaaagccgatgacctccattgaaacggacttgtctgaagagcaagaagtgcta
gctgccactatgactggcataaagtttaatgtatcaggtgatgaagataatgagaagatg
tcagtcatggaaattgttgcatcaagtcaggtgtctgaccctaagctggggttcccaaat
ttgaggaatcattgcaccacctgtgacgccagagatttgggacattgtgaaggtcatttt
ggggttattaaatttccgtacccaataatcaatccatattatctatcagaagttgtgcag
atattaaataagatttgccctggatgtaaatcaattcgcaaagatctattgataaagtgt
ctggcttcttgtgctcttaatcctttttttcttttaccttttattcttttactaattatt
tctggtcgacaggggaactcaattgattggtatccaccgatgacattcaagatatcctct
aaagagcttttcaaaaaaagcacaattgtggtagaggtaagtgaagattctttaatgatg
gtccgaaagagaggaaggcaagccttacctgctgattattgggattttattccaaaagat
caacaacaagaagaagatggtttgatgaaaccacgtagaagggtcctatcacatgcaaag
gttcattatttattgaaggatgttgatccagagttcattaaaaagttcattcagaatgtg
gactctattttcctcaattgctttcctgtgacacccaatagtcatcgagtgacagaaatc
acgcatagatcttctaattcacagcgcttgatctttgatgagagaactaggctttacaag
agactggttgatttccgaggagtagctaatgaattgagttcccatgtattggaatgccta
aaaatttcaaagctgttccaggagaagccatcaaatgaagataatgaacttatccttgcc
ctgataaggaataaagatcctgtttctaacatgtctggtttaagatacatgaaaaacgtt
cttcttggaaagcgaaatgaccattgcttccgcatggttcttaccggaaatccaaatctt
aaaccatcggaaattggtataccatgtcctgttgcagagaggttgcaaattgctgagcaa
ctgaacaagtggaacgaggaaagattgaaagcttgttgtaatttgcgtattctcgagaag
ggtgagatttgcattaggagagaaggtacattagttagaattcatcataatgaaaagatc
cgactgggggacatcatctataggcccctaaataatggggatatcgtgcttataaacaga
cctccttctatacatcagcactctttcattgctctgtctgtcaaagttctacctgtgagt
tcctctgtttcaataaacccccttatttgttccccttttcgtggagattttgacggtgat
tgcctccatggctatgttcctcagtccatcaacacaagggttgagctcagcgagcttgtt
tctttgaataagcagctaattaatggccaaaatggtcgaaatctactttcactgagtcat
gatagtttatcagctgcttatttggtcaatggtgagggggttctcttgaacttgtacgaa
atgcaacagcttgaaatgttctgtcccaatcgttcaccatcgccagcaattatcaaagct
cctttattgagtaatcctgtttggactggaaagcagttattcagcatgctctttcctccc
gaattggattatggttttgctccaagtgatgttgttatccgtaatggggagcttataact
tcatccgagggatcttcttggttccgagatgctgatggcaacctttttgaaagtcttatt
aaaaattgtcgaggaaaggtccttgattttttgcatggtgctcaggaagttctttgtgag
tggttatcgatgaggggtatgagcgtttcactcttggacctatacctaacttctgattca
aattcacgaaagaacatgatggatgaaatcttctatggtctccaagaaacagagctgact
tgcaactttaagcagttaatggttgattcctaccgtgatttccttgctggaaataatgaa
gaaattgatggttttgtgagttttgattttgaacggatgtgttatgagaagcaaatatca
gcgccagttaatcaagcttctgttgattcttttaagcaagtttttcgagatatccagaat
ttatcatacaaatatgcaaataaagacaattcattattgaccatgttcaaagcagggagc
aagggtaacttgctgaagctagtgcagcatagcatgtgtcttggactgcaatgttcactt
gtacctttatcattcaggtttcctccaaaactctcatgttctgaatggaatgatctaaaa
tctcagggcttaacccagaacggtgatgatactgttgaatctgcaacgaattttatccca
tatgctgtggtcgaaagttcttttatgacaggcctgaatccactagaatgttttgttcat
tcggttactagtcgagacagttctttcagcgaccatgctgaccttcctgggacactgtca
cgaaggcttatgttcttcttgcgtgatctatgtgcatcatatgacggaactgtgaggaat
gcatatggagatcaggttgttcagttcagctatggtagtgataagggtacatctactgca
actagttttgctaatgaaatacgaagtcagggcagtatcctacctgatggaacaggtggc
caacctgttggttcattgtctgcctgtgccatttctgaggctgcatatagtgctttggat
caaccgattagtctacttgaaacttcaccattgttaaacctgaagagggtccttgaatgt
ggttctagaagaaggaattccgaccagattatgacgctatttttctcggataaacttgga
aaggggagacattgtttcgagtatgcggctttagaaatcaagaattatttggagagattg
atcttttcggatattgtatctactgtcttaataacctactccccgcagaagtcaactgaa
aactgtttcaatccttgggtttgccattttcatgtgtgcaaggataccatgaaaaggagg
cgcctttcagtgcattctattattggttctctccagatgcactgcgccaatgccaaaaaa
ttatggaaaatcaatttgcctgacatccaagttacaagcgagtcttgttctcaatttggc
atgccaaataaagatgataggttttgtatcaccgtcacgattgttgagccttccaaaaag
tctcatatagaattggatgtgattcaagccatagtgctaccttctcttctggaagcagtt
gtaaaaggattcccggagatcaagaaggtgcaaattttatggaatgatcgattcaaagtc
tcaaaatctcataaaacttctcctggtgaactttacttgagggtagctgtaacaggtggt
tttagtaaaacaaacctctggggcatgcttatgaatgattgccttccaataatggatttg
atcgactggacacgtagtcatccagatgatattaatcagttttgcttggcatatggcata
gattctggatcgaaattttttctcaataatttcaagagcgctatatcagataccggcaaa
actatactaaatgtgcatttgcatcttgtcgccgattgtctgtctgttaccggggagttt
gttggcttaaactcaaaaggcttgagactacgacaagaacatgcgtttgtcacatctcct
ttcatgcaagcatgcttttctaatcctagtgcttcctttgtcaaagctgcaaagaaagga
gtttcggatgatcttcaggggaccattgatgcattgtcatggggaagagttcctcgcatc
gggaccggtgcacagtttgatatattgtactctatgaaggatgaaaggatcaccgaaccg
gttgatgtgtataagcttcttggaaatattgatggttctcagaagcaagatgtagagttc
gaagtacccaaagcttgtaacttcaagtccgagaaatatgtctctgaacttatggatgcg
cttggtgattccgcctttgaacggctgaaaaatattgaaacaaaaatattgagagaattt
ctgacgttaaatgacattcagaggctttcgcgtactttaaaggatatattgcacaagtct
cctattggccaccgcttaagcggagctgactggaattccgctatgatggcattgtacttt
catcctcgaagagatgagaaggtcggatctggagctcaagaaataaaggtagggtatcac
cctgaacataaaaattctcggtgctttcttttggcaaggaccgatgggacaatcgtagat
ttctcgtatcataaatgcgttatcggggctctcgaggtcatcgcccccgataaggtccaa
tcctacaagtcaaaatggtcacaatccggtaatctgtaa

DBGET integrated database retrieval system