KEGG   Gossypium arboreum (tree cotton): 108463922
Entry
108463922         CDS       T05776                                 
Name
(RefSeq) 5'-3' exoribonuclease 4-like
  KO
K20553  5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab04016  MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:gab00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04016 MAPK signaling pathway - plant
    108463922
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gab03019]
    108463922
Messenger RNA biogenesis [BR:gab03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     108463922
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC zf-CCHC_4
Other DBs
NCBI-GeneID: 108463922
NCBI-ProteinID: XP_017619416
LinkDB
Position
13:complement(86746437..86758033)
AA seq 941 aa
MGVPAFYRWLADRYPQSIVDVIEEEPREDGNGNQIPVDVSKANPNGLEFDNLYLDMNGII
HPCFHPDGKPAPATYDDVFKSIFDYIDHLYSLVRPRKLLYMAIDGVAPRAKMNQQRTRRF
RAAKDAAEAAAEEERLKEEFEAEGKALSHIEKPETCDSNVITPGTPFMGVLSVALQYYIQ
SRLNHNPGWKTTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGQQEKCFLCGRVGHLAAECDGKPDNGTGELNAVDDTPIHKK
KYQFLNIWVLREYLQYDLEIPNPPFEINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMQAYRREFASMGGYLTDAGEVLLYRVECFIQSVSVHEDQIFQKRTRIQQAYENNER
MKLKARGEDSEEARPPVVDKIKLGEPGYKERYYAEKFSVSNPGEIEDVRRDVVLKYVEGL
CWVCQYYYQGVCSWQWFYPYHYAPFASDLKDLTDLEITFFMGKPFKPFDQLMGTLPASSS
KALPEEYGKLMTEPSSPIYSFYPSDFEIDMHGKRFAWQGVVKLPFIDEWKLLSATRKLEA
TLTAEEQFRNSVMLDLLYVHPLHPLASQVLSYYYQFSPHKKNLWPIDTNASGGMNGFLWL
CERNGWQVVVSSPVKELPRIESNQILNVTYMNPSYHKHIPELPQGVVTPKKILTPLDIKP
FPVLWHEDNGGRRQQGRDRSRLPGAIVGPQLGEAAHRLVKNTLNIKPNGSSSGLFEQPPS
FNVSSNYTIIKQRPARPSGFERGFFDDPSLSYSSRPRAAGPSGGRGYSDGPNYYGQYNHL
HGVMANPRHLSSNSMQVNRNNFPAQDRLNHQERYHDLRTGMSALSFEGSGRDAIHVEMSS
RMPNPGYLRNLDHRSEQNTISPPIPTKWINMPENINAGTYN
NT seq 2826 nt   +upstreamnt  +downstreamnt
atgggagttccggcgttttaccggtggttagcagatcggtacccgcagtcgatcgtcgac
gtgatcgaggaagaaccgagagaagacggtaatggaaatcaaataccagttgacgtctct
aaggctaaccctaacggcctcgaattcgataatctttatcttgatatgaatgggattatt
cacccttgttttcacccagacggcaagcctgcacctgccacttatgatgatgtattcaaa
tcaatctttgactatattgaccatctatattcattggttcgtcctagaaagcttctatat
atggcaattgatggtgttgcacctagagctaaaatgaatcagcaacgtactcgacgcttt
agagctgcaaaagatgctgctgaggctgcagctgaagaggagagattgaaggaagagttc
gaggctgaggggaaagctttgtcccacattgaaaaaccggaaacatgtgactcaaatgtt
attactcctggcactccatttatgggtgttttgtctgtagcacttcagtattacatacaa
tccaggttgaatcataatcctggctggaagactacaaaggttattctttctgattcaaac
gttcccggcgagggagaacacaagattatgtcatacattcggttacaacgtaaccttcct
ggcttcaatccaaacactcggcactgtttgtatggtctggatgctgatttgatcatgttg
tccttagccacccatgaggttcacttttcaattttaagagaggtgatcactcttcctgga
caacaagaaaaatgttttttatgtggtcgagttggtcatctggcagctgagtgcgatggt
aagccagataatggaactggagaattgaatgctgtggatgatacaccaattcacaagaag
aaatatcagtttcttaacatatgggtgttgcgagaatatttacaatatgatttggagatc
cccaaccccccatttgagataaactttgaaagaatagtggatgattttgtttttttatgt
ttttttgtgggcaacgacttccttccacatatgccaacattagaaatcagggagggtgct
ataaatcttctgatgcaagcttatagaagggaatttgcttctatgggtggttatcttact
gatgcgggtgaggttttgttatatagagtggagtgttttattcaatctgtttctgttcat
gaagatcaaatctttcagaagaggactcgtatacagcaggcttatgagaataacgagcga
atgaagcttaaagcaagaggagaggactctgaggaggcacgaccacctgttgtagataag
attaaattaggggaaccaggatacaaagaaagatattatgctgagaaattcagtgtatca
aatccaggggagattgaagacgttagaagagatgttgttttgaagtatgttgaaggttta
tgttgggtatgccagtattactaccaaggtgtttgctcttggcaatggttttatccatat
cattatgctccatttgcttcagatctgaaggatctaactgatttggaaataacatttttc
atgggaaagccatttaagccatttgaccagctaatgggaacactaccagcatccagttct
aaagctttgccagaagaatacgggaaactgatgacggaaccatcatcacctatctatagt
ttctatccctctgattttgagattgacatgcatggtaaacgctttgcatggcagggtgtt
gtgaagttgcctttcatcgatgagtggaagttgctttctgcaacaagaaagcttgaagct
actttaacggcagaagagcagtttcggaacagtgtgatgcttgatctgctatatgttcat
cctcttcatcctttggcttcacaagttctttcatattactatcagttctcccctcacaaa
aaaaatttatggccaattgacacaaatgctagtggtggaatgaacggatttctttggtta
tgtgaaaggaatggttggcaagttgtagtctcttcccctgttaaggagttgccacgcata
gaatctaaccaaattttaaatgttacatacatgaatccttcatatcataaacacattcca
gaacttccacagggtgttgtaacacccaaaaagattctaactcctctagacattaaacct
tttcctgtattatggcatgaagataatggtgggcgccgtcagcaaggcagagatcgttca
cgactacctggagcaattgttggtcctcagctaggagaggcagctcatcgtcttgtcaag
aacacacttaatatcaaaccaaatggctcatcctcagggttatttgaacaaccaccgtct
tttaatgtctcaagcaactacacaatcattaaacaaaggcctgctagaccatcaggtttt
gaaaggggcttttttgatgacccaagtctttcttatagtagtcgaccacgtgcagctgga
ccatcaggtggaaggggatatagtgatggccctaattattatggtcaatataatcatctg
catggtgtaatggctaacccaagacatctgtcatcaaatagtatgcaagttaacagaaac
aacttcccggcacaggatagattgaatcaccaggaacgttatcatgatttgagaactgga
atgtctgctttgtcatttgagggaagtggcagagatgcaatacacgtagagatgtcttca
aggatgccaaatcctggatacttgcgaaatttagaccaccggtctgagcagaataccatc
agtcctcccattcctaccaagtggatcaatatgccagagaacataaatgctggaacttat
aactag

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