Gossypium arboreum (tree cotton): 108463922
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Entry
108463922 CDS
T05776
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
108463922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108463922
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
108463922
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
108463922
NCBI-ProteinID:
XP_017619416
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All DBs
Position
13:complement(86746437..86758033)
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AA seq
941 aa
AA seq
DB search
MGVPAFYRWLADRYPQSIVDVIEEEPREDGNGNQIPVDVSKANPNGLEFDNLYLDMNGII
HPCFHPDGKPAPATYDDVFKSIFDYIDHLYSLVRPRKLLYMAIDGVAPRAKMNQQRTRRF
RAAKDAAEAAAEEERLKEEFEAEGKALSHIEKPETCDSNVITPGTPFMGVLSVALQYYIQ
SRLNHNPGWKTTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGQQEKCFLCGRVGHLAAECDGKPDNGTGELNAVDDTPIHKK
KYQFLNIWVLREYLQYDLEIPNPPFEINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMQAYRREFASMGGYLTDAGEVLLYRVECFIQSVSVHEDQIFQKRTRIQQAYENNER
MKLKARGEDSEEARPPVVDKIKLGEPGYKERYYAEKFSVSNPGEIEDVRRDVVLKYVEGL
CWVCQYYYQGVCSWQWFYPYHYAPFASDLKDLTDLEITFFMGKPFKPFDQLMGTLPASSS
KALPEEYGKLMTEPSSPIYSFYPSDFEIDMHGKRFAWQGVVKLPFIDEWKLLSATRKLEA
TLTAEEQFRNSVMLDLLYVHPLHPLASQVLSYYYQFSPHKKNLWPIDTNASGGMNGFLWL
CERNGWQVVVSSPVKELPRIESNQILNVTYMNPSYHKHIPELPQGVVTPKKILTPLDIKP
FPVLWHEDNGGRRQQGRDRSRLPGAIVGPQLGEAAHRLVKNTLNIKPNGSSSGLFEQPPS
FNVSSNYTIIKQRPARPSGFERGFFDDPSLSYSSRPRAAGPSGGRGYSDGPNYYGQYNHL
HGVMANPRHLSSNSMQVNRNNFPAQDRLNHQERYHDLRTGMSALSFEGSGRDAIHVEMSS
RMPNPGYLRNLDHRSEQNTISPPIPTKWINMPENINAGTYN
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcgttttaccggtggttagcagatcggtacccgcagtcgatcgtcgac
gtgatcgaggaagaaccgagagaagacggtaatggaaatcaaataccagttgacgtctct
aaggctaaccctaacggcctcgaattcgataatctttatcttgatatgaatgggattatt
cacccttgttttcacccagacggcaagcctgcacctgccacttatgatgatgtattcaaa
tcaatctttgactatattgaccatctatattcattggttcgtcctagaaagcttctatat
atggcaattgatggtgttgcacctagagctaaaatgaatcagcaacgtactcgacgcttt
agagctgcaaaagatgctgctgaggctgcagctgaagaggagagattgaaggaagagttc
gaggctgaggggaaagctttgtcccacattgaaaaaccggaaacatgtgactcaaatgtt
attactcctggcactccatttatgggtgttttgtctgtagcacttcagtattacatacaa
tccaggttgaatcataatcctggctggaagactacaaaggttattctttctgattcaaac
gttcccggcgagggagaacacaagattatgtcatacattcggttacaacgtaaccttcct
ggcttcaatccaaacactcggcactgtttgtatggtctggatgctgatttgatcatgttg
tccttagccacccatgaggttcacttttcaattttaagagaggtgatcactcttcctgga
caacaagaaaaatgttttttatgtggtcgagttggtcatctggcagctgagtgcgatggt
aagccagataatggaactggagaattgaatgctgtggatgatacaccaattcacaagaag
aaatatcagtttcttaacatatgggtgttgcgagaatatttacaatatgatttggagatc
cccaaccccccatttgagataaactttgaaagaatagtggatgattttgtttttttatgt
ttttttgtgggcaacgacttccttccacatatgccaacattagaaatcagggagggtgct
ataaatcttctgatgcaagcttatagaagggaatttgcttctatgggtggttatcttact
gatgcgggtgaggttttgttatatagagtggagtgttttattcaatctgtttctgttcat
gaagatcaaatctttcagaagaggactcgtatacagcaggcttatgagaataacgagcga
atgaagcttaaagcaagaggagaggactctgaggaggcacgaccacctgttgtagataag
attaaattaggggaaccaggatacaaagaaagatattatgctgagaaattcagtgtatca
aatccaggggagattgaagacgttagaagagatgttgttttgaagtatgttgaaggttta
tgttgggtatgccagtattactaccaaggtgtttgctcttggcaatggttttatccatat
cattatgctccatttgcttcagatctgaaggatctaactgatttggaaataacatttttc
atgggaaagccatttaagccatttgaccagctaatgggaacactaccagcatccagttct
aaagctttgccagaagaatacgggaaactgatgacggaaccatcatcacctatctatagt
ttctatccctctgattttgagattgacatgcatggtaaacgctttgcatggcagggtgtt
gtgaagttgcctttcatcgatgagtggaagttgctttctgcaacaagaaagcttgaagct
actttaacggcagaagagcagtttcggaacagtgtgatgcttgatctgctatatgttcat
cctcttcatcctttggcttcacaagttctttcatattactatcagttctcccctcacaaa
aaaaatttatggccaattgacacaaatgctagtggtggaatgaacggatttctttggtta
tgtgaaaggaatggttggcaagttgtagtctcttcccctgttaaggagttgccacgcata
gaatctaaccaaattttaaatgttacatacatgaatccttcatatcataaacacattcca
gaacttccacagggtgttgtaacacccaaaaagattctaactcctctagacattaaacct
tttcctgtattatggcatgaagataatggtgggcgccgtcagcaaggcagagatcgttca
cgactacctggagcaattgttggtcctcagctaggagaggcagctcatcgtcttgtcaag
aacacacttaatatcaaaccaaatggctcatcctcagggttatttgaacaaccaccgtct
tttaatgtctcaagcaactacacaatcattaaacaaaggcctgctagaccatcaggtttt
gaaaggggcttttttgatgacccaagtctttcttatagtagtcgaccacgtgcagctgga
ccatcaggtggaaggggatatagtgatggccctaattattatggtcaatataatcatctg
catggtgtaatggctaacccaagacatctgtcatcaaatagtatgcaagttaacagaaac
aacttcccggcacaggatagattgaatcaccaggaacgttatcatgatttgagaactgga
atgtctgctttgtcatttgagggaagtggcagagatgcaatacacgtagagatgtcttca
aggatgccaaatcctggatacttgcgaaatttagaccaccggtctgagcagaataccatc
agtcctcccattcctaccaagtggatcaatatgccagagaacataaatgctggaacttat
aactag
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