Gossypium arboreum (tree cotton): 108479448
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Entry
108479448 CDS
T05776
Name
(RefSeq) DNA repair protein RAD16 isoform X1
KO
K15083
DNA repair protein RAD16
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gab03400
]
108479448
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
108479448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_3
ResIII
zf-RING_2
zf-C2HC_2
Prok-RING_4
zf-C3HC4_4
TPR_NUP160_120_M
zf-Di19
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
108479448
NCBI-ProteinID:
XP_017637541
UniProt:
A0A0B0PDD3
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Position
3:complement(58316364..58324542)
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AA seq
885 aa
AA seq
DB search
MQLRSRKRTSNFSTNEEHSDSSDQADNFIQLDDLSDSETYVRSSDSDLGEEEILDLNHKA
VKAAPITISDFTEPPTNRGNGEQILSEQNESQFDFNVSTAKKRNNTKRKKKARSGQPLMW
EVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSN
TKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPV
VAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPP
KEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERKKPKSMFKSGKKHASNYEADS
RKRASKKKAKHNKEDKDRDFEFDETSAGKEHNLPEGKSLLHSVKWERIILDEAHFVKDRR
CNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSS
TQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAA
DLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQ
AVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDF
SASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEAL
REEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFT
EDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQCKPIRIVRF
VIENTIEERILKLQEKKELVFEGTVGGSTEALGKLTEADMRFLFV
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttcgatcgcgtaaaaggacctccaacttctctaccaatgaagaacacagcgat
agttctgaccaagccgataattttatccagttggatgatctctccgattcagaaacctat
gtccgttcctccgattctgatctaggggaagaggagattctggacttaaaccataaagca
gtgaaagctgctcctatcaccatttctgattttaccgagcctccaacaaacagaggcaat
ggtgaacagatactatctgagcaaaatgaaagccagtttgactttaatgtgtcaaccgcg
aagaagagaaacaatacaaaaaggaaaaagaaggctaggtctgggcaaccgttaatgtgg
gaagtttgggaacaagagcatgagaaatggattgatgagaatttgacggtagatgttgat
cttgatcaacagaatgcggtaataactgagacttctgacgcatcatccgacttaattatt
cctttgttgaggtaccaaaaggaatggttggcctgggctctgaaacaggaagactcaaat
accaaagggggaatccttgcagatgagatgggaatggggaagaccattcaagcgatagcc
cttgtccttgccaaacgtcaagtactccatacaattggtgaacccaatgtttcgtcacag
actgcaggttcatcaacagatttgcccaggataagatgcacccttgttatttgtccggtt
gttgcggtgagtcagtgggtaagtgagattgatcggtttacttcaaggggaagcaccaag
gtgttggtttaccatggtgccaatagagggaaaaatgtgaaacagttctcagaatatgat
tttgtaataacaacatattcgattgttgaggctgaatataggaaattcatgatgccacca
aaggagaaatgcccttactgtgggaagtcatttcaccaaaagaagctctccgttcacttg
aaatattattgtgggcctgatgctattaaaacagaaaaccaatctaagcaagagagaaag
aaaccaaaatctatgttcaagtcaggcaaaaaacatgctagtaattatgaagctgattcc
agaaagagggctagcaagaagaaagcaaagcataataaggaagacaaagacagagacttt
gagtttgatgaaacttctgcaggcaaagaacataacttgcctgagggaaaatcacttcta
cactctgtgaagtgggagcgcatcatcttggatgaggctcattttgtgaaagatagacgt
tgtaatactgcaaaggctgtcctttctttggaatccttatacaaatgggctttgagtggc
actccactgcagaatcgtgttggagaactgtactctttggttcgcttcttgcaaatagtt
ccatactcctattacttgtgcaaagattgtgactgcaaaactcttgattatagttcatca
acacaatgcccaaagtgcccccataattctgtgaggcatttttgttggtggaataagtat
gtggctacgccaatacaacattatggaaatggtgagatcgggaaaagagctatgatattg
ctaaaacacaaaattttgaagaacattgtcctaaggcgtaccaagaaaggcagggctgct
gatcttgctcttcctcctagaattatttccttgagacgggacaccatggacattaaagaa
actgactattatgaatctttgtacagtgaaagtcaggcacaatttaacacatatgttcaa
gcaggaactgtaatgaacaattatgctcacatttttgacctcctcacacgcttgcggcag
gctgttgatcacccttaccttgtagtatattcaagtactgctgcacaaagagctggaaac
atagtcaatggtgataggaatgatgatgaacaagtttgtggcatttgcaatgatcctgca
gaagatccagtggttactgcatgtgcacatgtcttctgcaaagcttgtctgattgatttt
tctgcctccctgggaaatgtctcatgcccctcatgctcaagattacttactgttgatctg
actacgaatgcagatggagggcaatctagcaaaacaacactgaaggggtttaaatcctca
agtattctgaacagaattcaattaaatgattttcagacgagcactaaaatagaggctttg
agggaagaaatcagattcatggtggaaagagatggttctgcgaagggaattgttttcagc
caattcacatctttcttggatctcataaaatactcccttcataagtccagcataaaatgt
gttcaactagtagggagcatgtccttggctgcgagagatgctgcaattaagagttttact
gaggatccagattgcaagatatttctcatgagtttgaaagctggaggtgttgcccttaat
ctcacagttgcatcacatgttttcttgatggacccttggtggaacccagctgtggagcgc
caagcacaagataggatacaccgaatagggcaatgtaaaccaataaggattgtgaggttt
gttattgagaacacaatagaggagaggatattaaagctgcaagaaaagaaggaattagtg
tttgaagggacggtgggtggctccacagaggctctaggaaaattgacggaggcagacatg
agatttctatttgtgtga
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