Gossypium arboreum (tree cotton): 108479827
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Entry
108479827 CDS
T05776
Name
(RefSeq) transcription factor PIF3-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04075
Plant hormone signal transduction
gab04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108479827
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
108479827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gab03000
]
108479827
Transcription factors [BR:
gab03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
108479827
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
108479827
NCBI-ProteinID:
XP_017638127
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Position
11:122932645..122938567
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AA seq
706 aa
AA seq
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MPLSELYRMARGKLDSSQDKNPSSSTDPSIVPEDDFVELVWENGQISMQGQSSIARKVPV
CNSLQSHSFKIGDKYIGNGGNSSKMGKFGVVNAVSSEVPMSAPSHDDDVVPWLKYSENEC
CDMLPGLSGLCTNNIPTDSSLASFNQRRQSISDSFSGSLNAAADFKQGKLAKVPKPADDE
ARLRSGTSESPQLCQVSSSYLGSRNLESIGNKPSHAFFRDTMGVQPSDETLRCVKMQKQD
KVAPCNNTVLMNFSHFSRPAALVKASLQNIGAMARIESKETGFAASTRGPVGSKAIDSNI
KLQKETFSHCHSSIVPMKTDIKQSEAKSLDEPVAAEPNNANCEEYVPKSDKISSQVIGEN
ASNCLPESGKAVESVLAASVCCENNVERASDDPVVNNLKRKNHDNEEFECPSEDAEEESV
GVKKAVPARGGKGFKRSGAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEA
IEYLKTLQLQVQIMSMRAGLYVPPMMLPTGMQHMHATQMAYFSSMGFGMGLGMGFGMPFP
ETNTVASACPMVQVPPVCGAPFSGPGPHLSGSTAFHEMPGANLRLYGLHGQGLPMSVPGA
PLFPIPGGHLMKSAIGLSACGLGGPMDNMDSATASSSKDLIQNINSQVAQNTNINSSMNQ
TSTQYRTANESFQQPAEVQENGRASEITGSVPFRSTDGDKKLPDRL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgcctctatccgagctatatcggatggctagggggaagctcgattcatctcaagacaag
aacccttcaagttcaactgatccatctattgtacctgaggatgattttgttgaactggtt
tgggagaatggtcaaatttcgatgcaaggtcagtctagtatagctagaaaggttcctgtt
tgtaacagcttacaatcccacagttttaagattggagataaatatataggcaatggagga
aatagttcaaaaatgggaaagtttggggtggtgaatgcggtatcgagtgaagttccaatg
tcggctccgtctcatgatgatgatgtggtgccttggttaaagtactcagagaatgaatgt
tgtgatatgttgcctggattatctgggctctgtacaaataacatcccaactgatagtagc
ttagcttcatttaatcaaagacgccaatccatcagtgattccttttctggttctctaaat
gctgctgcggatttcaaacaaggaaagttggcaaaggttcctaaaccggcagatgacgaa
gctaggctgagaagtggtaccagtgagtcgccacaactatgtcaagtgtcttcatcgtat
cttggatcaagaaatttggagagtattggtaataagccgagccatgcctttttcagagat
acgatgggagttcaaccgtcagatgagactttgcgttgtgttaagatgcagaaacaagat
aaagttgcaccttgtaataatactgtcttgatgaatttttcccatttttcacgtcctgct
gctcttgttaaagctagtcttcagaatataggtgctatggctaggattgagagtaaggaa
acagggtttgcagccagtactagggggcctgttggttccaaggccattgattcaaatatc
aagttacagaaggaaaccttttcacattgccattcttcaatagtgccgatgaagactgat
ataaaacaatctgaagctaagtctctagatgagccagttgctgctgaaccaaataatgcc
aactgtgaagaatatgtcccaaaaagtgataaaatatctagtcaagttattggtgaaaat
gcttccaattgcctgccagagagtggtaaggctgtagagtctgtgcttgctgcttctgtt
tgctgtgaaaataatgtagaaagagcttctgacgatccagtagtaaataatttgaagaga
aaaaaccatgataatgaggagtttgaatgtcctagtgaagatgctgaagaagaatctgta
ggtgtgaaaaaagcagttcctgctcgaggaggtaaggggttcaagagaagcggagcagct
gaagtgcataatttatctgaaaggaggcgaagggataggataaatgagaagatgcgtgct
ttacaggagctcatacctaactgcaataaggtggacaaagcttcaatgcttgatgaagca
attgaatatcttaagacgctccaactacaagtgcagattatgtctatgcgagctggctta
tatgtgccaccgatgatgttgccaactggaatgcaacacatgcatgccactcaaatggcg
tatttttcatccatgggttttggaatgggtctaggtatgggttttgggatgccatttcct
gaaacgaatactgtagcttctgcttgccctatggttcaggtgcctccagtctgtggagca
cctttttctggcccaggccctcatttgtcaggttcgactgcattccatgagatgccagga
gctaacctccggctatatggtcttcatggtcaaggacttccaatgtcggtgccaggtgca
cctttgtttcctattcctggtgggcacctcatgaaatcagccattggattgagtgcctgt
ggactgggaggtcctatggacaatatggattcagctacagcttctagttcaaaggaccta
attcagaatatcaactcacaagtggcacagaatactaacatcaatagctcaatgaatcag
acatctactcagtaccgaacagcaaatgaaagttttcaacagccagctgaagtgcaagag
aatggtcgagcctcggaaatcactggtagtgtaccttttagatcaactgatggagataag
aagttacctgataggttataa
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