Gossypium arboreum (tree cotton): 108489540
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Entry
108489540 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108489540
KO
K11086
small nuclear ribonucleoprotein B and B'
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108489540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108489540
03041 Spliceosome [BR:
gab03041
]
108489540
03032 DNA replication proteins [BR:
gab03032
]
108489540
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
108489540
Spliceosome [BR:
gab03041
]
Complex A
U1 snRNP components
Sm proteins
108489540
U2 snRNP components
108489540
Complex B
U1 snRNP components
108489540
U4/U6.U5 tri-snRNP components
108489540
Complex C
U2 snRNP components
108489540
DNA replication proteins [BR:
gab03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
108489540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
108489540
NCBI-ProteinID:
XP_017649654
UniProt:
A0ABR0NAA5
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All DBs
Position
10:complement(507300..509972)
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AA seq
287 aa
AA seq
DB search
MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNP
STNQEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKSAAANAVPGPGIGRAAGRGIP
TGPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAASGAPPVIRPPGQ
MPPGGYPGQPQAPQMQRGPPPQVPPPAFGVRPPQQFPVPPPQYGQRPMVPPPGSMMRGPP
GPPPPRPGMPAPPPPRPGMPPPPGAVPVFGPPRPGMPPPPNPPNQQQ
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgtccaagagttccaaaatgcttcaattcatcaactaccgtatgcgggtcact
atccaagacggccgtcagttggtgggtaagtttatggctttcgatcgtcacatgaatctc
gtcctcggtgactgcgaggagttccgtaagttgccgccggctaaagggaagaaaaacccc
agtaccaatcaggagcgtgaagatcgtagaacgcttggtcttgttcttcttcgtggtgaa
gaggttatttctatgactgttgagggtcctcctcctcctgaagagtcgcgttcaaagtct
gccgctgctaatgctgttcctggaccgggtattggtcgtgctgctggtcgtgggattccg
actggtcctcttgttcaagctcagcctggtcttgctgggcctgttcgtggtgttggtgga
ccggctcctgggatgatgcagccccagatttcacggccaccggttccgcaactgtcagct
ccgcctatgacttaccctgctgctagtggagcacctcctgttatccgtccacctggacaa
atgccacctggtggttaccctggtcaaccacaggctcctcagatgcaacgtggtcctcct
ccacaggtaccaccacctgcttttggagtaaggccacctcaacaattccctgtcccacca
ccacaatatggtcagaggccaatggttccacctccgggatcaatgatgagaggacctcct
ggtccaccaccaccacgccctggaatgcctgctccaccacccccacgccctggaatgccg
cctccccctggtgctgttcctgttttcggaccaccacgtcctgggatgccacctcctcca
aaccctccaaaccagcagcagtag
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