Gossypium arboreum (tree cotton): 108489722
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Entry
108489722 CDS
T05776
Name
(RefSeq) transcription factor PIF1 isoform X1
KO
K16189
phytochrome-interacting factor
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108489722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gab03000
]
108489722
Transcription factors [BR:
gab03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
108489722
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
PRC2_EED_ins
Motif
Other DBs
NCBI-GeneID:
108489722
NCBI-ProteinID:
XP_017649922
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Position
11:16212915..16216895
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AA seq
556 aa
AA seq
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MNHCVPDFEMEDDYAILSPPSLTRVEKPPPRPEDEIMELLWQNGQVVMQSQNQRSMKKLP
SFKLLDADHSAPREIRSSSPSHKHRRHHHQEQQQLVTDHLFMQEDEMASWLHYPISDTNF
DHDFCTDLLYPPSSSPTAAVAPCVSSTVATSTPPILKRVSQVSVSASANESVPRPPVPPA
RRNELEPARIHNFSHFSRHITARAEQSELSNSKSVMGESTVVDSSNTPAAAPELRAAQAM
PSNTEAASGGNNNNNNNNNNANANMSAAGVPYLQSADVRLGANKGSLATCEVTVTSSPGG
SSASAEPTAQKAASAEDRKRKGRELDEAECHSENAEFESADTKKQTRGSTSAKRSRAAEV
HNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDDAIDYLKSLQMQVQMMSMGCGMVP
MFPGVQQYISPMGIGMSMGMDMGIIRPMMSFPNVVAGSALPTLAAAAHLGPRIPMPAFHM
PPSIPAPDPSRFQPSNQSDPIPNPLFMQNLNQAQQYIGLHQTMQIPHPQGQAMAQPSSRR
GAEKVENHPTGRSISF
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaatcactgcgttccagatttcgaaatggaagacgattatgcaatcctttcacctcct
agtttaactcgagttgaaaagcctccgcccagaccagaggatgaaatcatggagctgttg
tggcaaaacggacaagttgttatgcagagccaaaatcaacgatctatgaagaaattgccg
tcgttcaaacttctcgacgccgatcattcggctcccagggagatccggtcatcatcacca
tctcacaagcatcgtcgtcatcatcatcaagagcaacagcaattggttaccgatcatctc
ttcatgcaagaagatgaaatggcttcgtggcttcactatcctatcagcgacacaaacttc
gaccacgatttctgcactgatctcctctatccaccctcctcctcccccaccgctgccgtc
gcaccttgcgtgagctccactgtggcaacttccactcctcctatacttaaaagagtttct
caagtttcggtttctgcttcagctaacgaatcagttcctaggcccccggtaccgccggct
aggaggaatgagttggagccggcaaggatccacaacttctctcacttctcgaggcatata
acggcgagggcggagcaatctgaactctcgaattcgaagagtgtaatgggggaatcgacg
gtcgttgattcgagcaatactccggcggcagctcctgaattgagagccgctcaggctatg
ccaagcaacactgaggcggcatctggcgggaacaacaacaacaacaacaacaacaacaat
gccaacgccaacatgagcgccgccggagtaccctatttgcaatcagctgacgtcagactg
ggtgccaacaaaggcagtttagccacgtgcgaggtcaccgtgacatcatcacctggaggc
tccagtgctagcgctgaacctacggctcaaaaggcggcctcggctgaagaccggaagcgt
aaaggcagagaactggacgaagccgaatgtcacagcgagaatgctgagtttgaatcggct
gacacgaagaaacaaacgcgtggatccacatctgcaaaaaggtctcgtgctgcagaggtc
cataacctctccgagaggagacgcagggatcgtataaatgaaaagatgagggctttgcaa
gaacttatacctcgttgcaacaagtcagataaagcttcaatgctggatgatgcaattgat
tacttgaaatcacttcagatgcaagttcagatgatgtctatgggttgtggcatggtccca
atgtttccaggtgttcagcagtatatatccccaatgggaattgggatgagtatgggcatg
gatatgggaataattaggccaatgatgtcatttcccaacgttgtggctggttcagcgtta
ccaacattggcagctgcagctcatttgggtccaaggattcctatgccagcctttcatatg
ccaccatcaattccagctcctgacccatcaagattccaaccaagcaatcaatctgacccc
atcccaaacccgcttttcatgcaaaacctaaaccaggcccagcagtatattggtcttcac
caaactatgcaaataccccatccacagggtcaagcaatggcccagccaagtagcagaagg
ggagctgagaaagttgagaatcacccaacaggtaggtccattagtttctag
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