Gymnodraco acuticeps: 117544703
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Entry
117544703 CDS
T09661
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
gacu
Gymnodraco acuticeps
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gacu03036
]
117544703 (smchd1)
03400 DNA repair and recombination proteins [BR:
gacu03400
]
117544703 (smchd1)
Chromosome and associated proteins [BR:
gacu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117544703 (smchd1)
DNA repair and recombination proteins [BR:
gacu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
117544703 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Glyco_hydro2_C5
Psb28
Motif
Other DBs
NCBI-GeneID:
117544703
NCBI-ProteinID:
XP_034069911
UniProt:
A0A6P8TZS3
LinkDB
All DBs
Position
Unknown
AA seq
1976 aa
AA seq
DB search
MHNMQFNRPFMEGGKVRRRIRIYDCRSKNGEKVNQEMLETSGLDFKGFIKLLHRTFGIRS
NETFVLATTDRAVLDSKIFDELQDDSTLHLLKQKHQALAAATEENINFTPHYDTLIQSGT
YEYWASRGQNPLPYSLAELIDNALSATAKNQGVRKIEIRMMFDDTLGKPAVIVLDNGCGM
TSKQLKNWAVYRLSKFTRDVGSYGSEDEGYVRPDPVPRSLNSDISFFGVGGKQAVFHIGD
SVRMISKPYGSPDVHEMVISKQDFEKKVKNKEDVYSGIIRNRKPGDLSHVKTNDERFLHN
LILEESGKEKFTAVVITGVFPDHIAFLKQDIKVWTRQLAEVYHYYIHGVNGKEMRDSSAD
SDCHPEIKIMISLRDKPPVVMDLREVENDIQTMYIKSAVDTFEFKATTAQDGGTVDGLIR
YHPFLYDRETYPEDPNAVQAPDDEDDGDNEPGVLHQERRKRPIFDCFWNGRLIPYTTVSE
FDWCAQSKGVKELAECYSRISGVLFTDDRFPVSTNKLTFMELELKLKHRDTFFTRIVKGQ
KQRGNIQKDFMQWLKNCHEKWDKQVKFLNFKKTITRSELPVKRMQYPWATFTSIEWDGKI
YSKGQLVKSQKTQPILYGSVVRFLLYGQHEEDVFATGGEVEICMEPKAFHDKIKTIPISK
IDKNATSEAIQRNIDNDLAKLPECLNVSWPEGDPWLEGGARPAGTPLGPLSINIMNKKGE
SISQMPAVGQGAGKRLIIDLKVFQHGNKPGQKKEVLSHATPTSAKFFWFKKIEMLTGLGE
YTLILRTLINENKADSFGGTELPSYKLNFTIKEGKAESFVIGTMSSSLRVGMPFDIPLQI
KDGYDHPTVPPPDLKPILKCSSLTSLNFDKTESSGTTLYIRRVKASGKVLNYLQPKTYDL
RVTLPGLTQNTETIKFSLLPGTAHSIHVTPEDKPIKVDNGKPILFNVEIHDEAGNITANS
KQIVRCEVQGFPGVATDCSNSGAGQLMIKPVNLKIIKGQPEKLHVQFEMPSQKKIKPVMR
ELEVVPSKRVSRMEICSKDDENLVLTDNEKILWLAGGLMENLFYKLYDEAGRDIPLTAEI
ASKIKVNWTGDVNLRDLVQGKLPDLKVPHQVQEERFFQVSYQDQNVSVSFHIKPQPDEPN
RLKATLLKSTVKLGEVIPGNISLELVDQYDNVTKTLSSDSKNHMAVKAEGLDESAITFKW
QESSSSVLVMGVQFRSGTVGPREICFTYEKYEERVIVKVTAGVPAQLKLVSGPVQPLQVL
NDQGIDTPFVVQLCDEWGNPCSDQRVVVQLKSSPQALKVKSSVVSQPVNMEGKASFTVTS
LSGPKGYYQLDFKGSLDRKPIPGPSVNITITPDPNKPVSLSVVYDNNATFPAGGVFPVFS
VTVVSDEGSPITTNPAAASMLLWKGVQSGRIPPKTATELKCSKPMENQKSDRFYFRDKEI
PEQVGKHTVQFSLRLEGATFLFSEQITINVVANQPVKLGPASQPPTPVVSYSKVLAHRTL
VENMTLRIMDSSGNPTGEDLNGNVVISIKNCSGDGNKTIPLFEGKTTFLEISLEEGKAHI
DRLALMENSPGENGSAYTLLFTPEGPMVPPTLAPFELPFHFYNDADNQRKMSELSKKKDD
LTTAVHADKELFNTYGQLLSVLTSHHIAASHKETSIRKDLHRRNMETAQTIPHFDRLITE
KRAEIEKIMKTRRRVCSLQDHYKGQQDVLGMVGHLAFVEDDHAAWVISWHIQGDMDCVIT
KTTEAAKRIYDDTRGRQQVMALDSVFVHPGNRPLPHMGSGCMLFDPPGNPVYARDLLLYT
EDRDRDMAFKNILGETILIDDLDSANNYRKAVVQKKKPCPTILTRQGDRVSSRGKFGGRN
NKAQPIDTLKVFGAPFPQHYFLLKDHIDLLTQQRSALEKVDQAAKARDHHLNNMKSPEML
RKVQEMEERKKQLEEIERQLVSTPGRPLKRALDSAGEPSGINPKRSSRDPRLRSTT
NT seq
5931 nt
NT seq
+upstream
nt +downstream
nt
atgcataacatgcagttcaatcgccccttcatggaaggaggaaaagtacgcagaaggatt
cgtatttacgactgccgctccaaaaatggggagaaagttaaccaggaaatgctggaaacg
agtggtttggacttcaaaggctttattaaacttctgcaccggacatttgggatccgttca
aatgaaacatttgtgttggccacaacagacagagcagtcctggattctaaaatatttgac
gagcttcaagatgacagcaccctccacttgttgaaacagaaacaccaagctctggctgcg
gcgacagaagagaacatcaactttactcctcactatgatacgctgatacagagtggcacc
tatgagtactgggctagcaggggacagaacccattgccatactcacttgctgagctgatc
gacaacgctctttcagccacagctaaaaaccaaggagtgaggaagatagaaatacgcatg
atgtttgatgacactctcgggaaacctgcagtgattgttttagataacgggtgcgggatg
acctctaaacaactcaaaaactgggctgtgtacagactctctaagtttaccagggatgtc
ggctcctatggaagtgaggatgaaggatatgttcggcctgatcctgtccctcgcagtctc
aacagcgatatatccttctttggagttggaggaaaacaggctgttttccacattggagac
tcagtcaggatgatcagtaaaccatatggctccccggatgttcatgagatggttatttcc
aaacaagactttgagaaaaaggtgaagaacaaagaggatgtttacagtgggatcattcga
aacaggaagcccggcgacctttcacatgtgaaaacaaatgatgagcgcttccttcataac
ctcatcctagaggaatccggcaaggaaaagttcacggctgtggtcattacaggagtcttt
cctgatcacatcgcttttctaaaacaggatatcaaagtgtggacgagacagctggctgaa
gtataccactactacattcatggagtcaatggaaaggaaatgagagacagctccgcagac
tcggattgtcaccctgaaataaaaatcatgatcagtttacgtgacaagcctcccgttgtg
atggatcttagagaggtggaaaacgacattcagactatgtacataaaatcagctgtggac
acgtttgagtttaaggccaccactgcacaagatggcggcacagtggatggactcattcgg
tatcatcccttcctgtatgacagggagacttaccctgaggaccctaatgctgtgcaagcc
cctgatgatgaagatgatggtgataatgagcctggagtcctgcatcaggaaagaaggaaa
aggccgatatttgactgtttctggaacggacggctcataccttacaccacagtgtctgag
tttgactggtgtgctcagagtaaaggagtaaaggagcttgcagagtgttacagtcggatt
tcaggggtgctcttcactgacgacagattcccagtcagcaccaacaagctcaccttcatg
gaactggagctgaaactgaagcacagggacactttcttcacacgcattgttaagggacag
aaacaaagaggtaacattcagaaggacttcatgcagtggctaaagaactgtcacgagaag
tgggacaagcaagtgaagttccttaacttcaagaagaccatcacacgaagtgaattgcct
gttaagagaatgcagtatccctgggcgacattcacctccatcgaatgggacggcaaaata
tactcaaaaggccaacttgtgaagtctcagaaaacgcagcccattctctatggcagcgtg
gtgcgtttcttgctgtatggacaacatgaagaagatgtctttgccacagggggagaggtg
gaaatttgtatggaacccaaagcatttcacgacaagatcaagaccatacccatttccaag
attgacaagaacgccacttccgaagccatccagagaaacattgacaatgacctagccaag
cttccagagtgtctgaacgtgagctggcctgaaggagacccctggctagagggtggcgct
cgtccagctgggactccattagggccactcagcatcaacataatgaacaagaaaggagag
tctatatcccagatgccagcagttggccagggagccgggaaaagactcattattgatctc
aaagtctttcagcatggtaataagcctggtcaaaaaaaagaagtcttaagtcatgctacc
cctacttcagcaaagtttttctggttcaaaaagattgagatgctgaccggcctgggggag
tatactctgatactgaggactcttatcaacgagaacaaggccgacagctttgggggcaca
gagctcccgagctacaaactcaacttcaccatcaaagagggaaaggctgagagttttgtt
attggtacaatgagctccagtcttcgcgtgggaatgcccttcgacattcctctgcagata
aaggacggttacgaccaccccacagtgcctcctccagatctcaaacctatactcaaatgc
agtagcctgacttcactcaatttcgacaaaacggaaagcagtgggacgacgttatacatc
agacgtgtcaaagcaagtggaaaagtcttgaactacctacaaccaaagacatatgatctg
agagtgaccctgccgggcttgacgcaaaacacagagactatcaagttcagtcttcttcct
ggtactgcacactccatccacgtgacaccagaagacaaaccaatcaaagtagataatgga
aaacctatcttgtttaatgttgagatccacgatgaggcaggaaacatcacagctaactcc
aaacagatcgttcgatgcgaggttcaggggtttccgggagtggctactgactgcagcaac
tcaggagccggacagctcatgataaagcccgtaaacttgaaaataattaagggacaacca
gaaaagctccatgttcaatttgagatgcctagtcagaagaaaatcaagccggtgatgagg
gagctggaggtggtgccgagcaaaagagtcagccgcatggagatctgcagcaaggacgat
gagaacttggtactcacggacaacgaaaagatactctggctggctggaggcctgatggaa
aacctcttctacaaactgtacgatgaggctggtagagacattcccctcacggctgaaata
gcctccaagataaaggttaactggacaggcgatgtaaatctgagagatttggtccagggg
aagctgccggacctaaaggtgccccatcaggtgcaggaggagcgcttcttccaggtgtcc
taccaagaccagaatgtgtcagtctccttccacatcaaaccacagcctgatgaaccaaac
cggctgaaagcaactctactgaaaagcacagtgaagctcggggaagtcataccaggaaac
atcagcttggagcttgtggaccagtatgataatgtaacaaagacgctttcctccgactct
aagaaccacatggcagtgaaagctgagggtctggacgaatcggccatcaccttcaaatgg
caggagagcagcagttctgttctggtgatgggggtgcagttcaggtcggggactgttggc
cccagagagatctgcttcacctacgagaaatatgaggagcgcgtcatagtaaaagtgacc
gctggagtccctgcacagcttaaactagtcagtgggccagtgcagcctctgcaggtgttg
aatgaccaaggcatcgacacaccgtttgttgtccagctgtgtgacgagtgggggaacccc
tgctcggaccagagggtggtggttcaattgaagtcgtcaccacaggcactgaaggtgaag
tcatctgttgtttcacaacctgtgaacatggaagggaaagcctctttcactgttaccagt
ttgagcggaccaaaggggtactatcagctggattttaaagggtccctcgaccgcaaaccc
atccccggtccctcagtgaatatcaccatcactcctgatcccaacaaacctgtgagcctg
tccgtggtgtacgacaacaatgcaacgtttcctgcaggaggcgtcttcccagtcttctct
gtgacggtggtgtctgatgaaggaagccccattaccaccaatcctgctgctgcgtccatg
ctgctgtggaagggagtgcaatcaggaagaattccaccaaagacggccactgagctgaaa
tgcagtaaacccatggagaaccagaagagcgaccgtttttactttagagataaagagatc
ccagaacaagttggaaaacacacggtccagttttctctacgactggaaggagctacattc
cttttcagtgaacagatcactataaatgtggtggccaatcaacctgtcaaactgggaccc
gcctctcagccacccaccccagttgtttcctacagtaaggtgttagcccaccgaaccttg
gtggagaatatgactctgaggataatggattcttctggaaacccaacgggggaagacctt
aacgggaatgtggtcatttctataaagaactgcagcggagacggcaacaaaaccatccct
ctgtttgaaggcaaaaccacatttttggaaattagcttggaagaaggaaaggcacatatc
gacaggctggctctcatggagaacagccccggggagaatggaagtgcatacaccctcctc
ttcacacctgaagggccgatggttccccccaccctggccccctttgagctgcccttccac
ttctacaatgatgcagacaaccaacggaaaatgtctgagctgtccaagaagaaagatgat
ctcaccactgctgttcatgcagataaagagttatttaacacttatggacaactccttagt
gtgctgacctctcatcacatcgctgcaagtcacaaagagacttcgattagaaaggatctt
cacaggaggaacatggaaacagcacaaaccattccacattttgacagactcataactgag
aagcgtgctgaaattgaaaagataatgaaaacacgcagaagagtttgctccctccaggat
cactacaaggggcagcaggatgttttgggaatggtcggccacctggccttcgtggaggac
gatcatgctgcgtgggttatctcctggcacatccagggggacatggactgtgtcatcacc
aaaaccactgaagcagcgaagaggatctatgacgacaccaggggccggcagcaggtcatg
gccctcgacagtgtttttgtgcaccctggcaacagaccgttgccgcacatggggagtggc
tgcatgctctttgatccccctgggaacccggtctacgccagagacctgctgctgtacacc
gaagaccgggaccgtgacatggcttttaaaaacatcctcggagagacaattctgattgat
gacctggactctgctaacaactacagaaaggcggtggtgcagaaaaagaagccatgtccc
accatcctgaccaggcagggggacagggtcagctccaggggcaagtttggaggaagaaat
aacaaagcccaaccaatcgacacattaaaagtgtttggagcccccttcccacagcattac
tttttacttaaggaccacatagacctgctcactcaacaacgctcagctctggagaaggtg
gatcaggcagcgaaggctcgtgaccatcacttaaataacatgaagtctcctgaaatgctg
agaaaggtgcaagaaatggaggagagaaagaagcagctggaagagattgagagacagctc
gtgtcgaccccaggcagaccattgaaacgggctcttgatagcgctggagagccatccggc
atcaatcccaagagatcgagcagagatccacgcctgaggtccacaacctga
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integrated database retrieval system
