Gymnodraco acuticeps: 117555872
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Entry
117555872 CDS
T09661
Symbol
kdm2ab
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117555872 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gacu03000
]
117555872 (kdm2ab)
04121 Ubiquitin system [BR:
gacu04121
]
117555872 (kdm2ab)
03036 Chromosome and associated proteins [BR:
gacu03036
]
117555872 (kdm2ab)
Enzymes [BR:
gacu01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117555872 (kdm2ab)
Transcription factors [BR:
gacu03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117555872 (kdm2ab)
Ubiquitin system [BR:
gacu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117555872 (kdm2ab)
Chromosome and associated proteins [BR:
gacu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117555872 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117555872 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
LRR_6
Cupin_8
Cupin_1
LRR_Zer-1
Motif
Other DBs
NCBI-GeneID:
117555872
NCBI-ProteinID:
XP_034086786
UniProt:
A0A6P8V9T4
LinkDB
All DBs
Position
Unknown
AA seq
1289 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLQCSRFNSELIKHMEGKDF
TFEYIQREGLREPIIFEAANGLGIQMPDSDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYDTPPSEREKLYNVISLEFSHTKLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
MYENWVLSGKQGDIFLGDKCFDCQRIELKQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCQTNISHLTPEFKKYSLGIG
LTKADMENIDSNKNGTSNGVDSDTENKEIKEEAVKEQDEEEAKETEAQHLLTPFELEGLW
NLLGKLEGLPEQKKCVPVGILNPDALLDDMKTLLKGHVNDDAKLSYTGEPIVKWPKRPSW
YQPPTPPPPVIYRPRLGTKPLRSIKRSSISALRRRRVRCKRCAACCRKECGTCQFCHDMR
KFGGPGRMKKGCIMRRCLVPVLPNTARCAICVEGESDESNPSTHSLMECSVCSQIVHRQC
NKEPGEGKINKDLPSCWECPKCYHGKDSGSESTSDEESGESEGSTALPPIKRAYREGIGV
GARRGTRSGSSSRPTAPPPSQKLLLQHQQNRQRANALELRLKKRIKLERSKILTKQSSQE
RSPRSLCSRLPSRRRSATSRLSQGRGRGSTWAGAPPHPSSPGGTASASFQQQQQXQQQQQ
QQQQQSSLGLALEPKGEARRGRGRGVRLRGGGAGRGMRSGRSHEELETEDSSSSNSSSSS
SSDEEEGQNSGRGLDKENQPQSRREAAKEREEDLSEAANQNGAEEDEEESEQDGETVRRK
VALQKPRTRAQRDPSAIVPKLEAIAPQTPPSTIHNQSRVLARPPIRNRGPDPHSSKHARP
HTPSGHTDTRERLEDSQKTRPAKLSNGASSSSTPDLPHLRIPLSALQEGGGEAERENGAS
GPGCEREVWVSVFRYLSRADLCVCMAVCKNWYKWCLDKRLWARIDLSIKRTVTPQALTGI
IKRQPITLDLSWTNISKKQLSWLVGRLPALKDLMLAGCSWLSISALCSSACPLLRSLDLR
YADGVKDSQIRDLVTPPGCDNRSQLRSMQCLRLAGLDISDSTLRLVIRHMPHLTKLDISH
CNNLTDNSINLLTAVGSSTRNTVTELNLGGCSKLSDTCLKYLRRLACISLLDLRGCNGVS
RKACEAFISELSVNMLYFLSDDKLIQRIS
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccctcatacacggtacagcaaacgcctgcgtacagggacgcgacgccgctac
caagacgatggaatctcagacgatgaaattgaagggaagcggatgttcgacctggacgag
aagctgcagtgcagcaggtttaactctgaattgatcaaacacatggagggaaaagatttc
acatttgagtacatccagagggaagggctcagggagcccattatctttgaggcagccaat
ggccttggcatacaaatgccagactctgatttcagtgtgagtgatgtcaagttgtttgtc
ggaagtcgacgaattgttgacgtgatggatgtgaacacccagaaaggaatcgagatgtcg
atggctcagtggagacgctactatgacacgccgccatcagagagagaaaaactctacaac
gtcatcagtctggagttcagccacaccaagctggagaatctggtcaaacggccggcttcg
gtggacctcattgactgggtggacaacatgtggcctcgccacctcaaggagagacagaga
gactccactaacgccatcatagacatgcattatcccaaagtgcagaagtactgtctcatg
agtgtgcagggctgcttcacagatttccacatcgactttggaggcacttccgtctggtac
cacatcctgcgaggaggaaaggtgttctggctgattccacccacaccccagaacctggag
atgtacgagaactgggttttatcaggaaaacagggagacatcttcttgggggacaagtgc
tttgactgtcagaggatagaactcaagcaaggaaacaccttcataatcccatcagggtgg
atccatgctgtgtacaccccagaggacacgttggtgtttggggggaatttcctccacagc
tttaacatccccatgcagctcaacatctacagcatcgaggatcgcacacgggtgccagca
aagttccgctaccctttttactatgagatgtgctggtacgtcctggagagatacctctac
tgtcagaccaacatctcccatctcactcctgagttcaaaaaatactccctgggcatagga
ctgaccaaggctgacatggaaaacatcgactccaacaagaatggcacctctaatggagtc
gacagcgacactgagaacaaggagataaaggaagaggcggtcaaagaacaggacgaagag
gaagctaaagagacagaagctcaacacctgctgactccctttgagctggaggggctgtgg
aatctcttggggaagctggaggggctgccggagcagaagaagtgcgtccctgtgggcatc
ctgaaccccgacgccctgctcgatgacatgaagactcttctaaaggggcatgtcaatgat
gacgccaaactgtcctacactggagagcccatcgtcaagtggcccaaaaggccttcatgg
tatcagccccccactccccctccccccgtcatttaccgtcctcgcttgggcaccaagccc
ctgaggtccatcaagcgctcctccatctccgccctgcggcgccggcgggtcaggtgtaag
cgctgcgccgcctgctgcaggaaagagtgcggcacctgccagttctgccacgacatgagg
aagtttggtggtccggggcgcatgaagaagggctgcatcatgagacggtgtctagtgcct
gtcttgccgaacacagcgcgatgtgccatatgtgtagaaggggaatctgacgaatcaaat
cccagcactcactccctgatggagtgctctgtgtgctcgcagatagtccatcgtcaatgc
aataaggagcctggtgaagggaaaatcaataaagatctacccagctgctgggaatgtccc
aaatgttaccatggaaaagactcaggctcagagtctaccagcgatgaggagagtggagag
tcggagggctcaaccgctctgccaccgatcaaacgtgcctaccgggaaggcatcggcgta
ggggcgagacgagggacacgtagcggttcctcctcccgacccacagctcccccaccgtct
cagaagctgctcctgcagcatcaacagaaccgacaaagagcaaatgcactggagctcaga
ctgaagaagaggataaaactagagcgcagcaaaattttaacgaagcagtcgtctcaggag
cgttccccccgctcgctgtgctccaggttgccgtccaggcggcgctccgccaccagcaga
ctctctcagggccgaggccggggctccacctgggccggagcgcctcctcaccccagctct
ccaggggggacggcgtcggcgtctttccagcagcagcagcagncacagcagcagcagcag
caacagcagcagcagtcttccctcggtctggcacttgagcccaagggagaggctcgccga
gggagggggagaggggtgaggctgcgggggggaggagcggggagaggcatgagaagtggt
agaagccatgaagagttggagacggaggacagcagcagcagcaacagcagcagctccagc
agcagcgacgaggaagaggggcagaacagcgggagggggctggataaggagaaccagcca
cagtcgaggcgagaggcagccaaagagagagaggaggacctgagcgaggcggccaaccaa
aacggagcagaggaggacgaggaggagagcgagcaggacggtgagacggtgaggagaaaa
gttgcactccaaaagcccagaaccagagcccagcgggacccgtcggccatcgtccccaaa
ttggaagccatcgcccctcaaactcccccttccacaatacacaaccagagcagggtcctc
gccagaccccccattaggaaccgcggtcctgatccacactccagtaagcacgcacgccca
cacacaccgagcggacacacagacactcgagagaggctggaggactctcagaaaaccagg
ccggctaaactgagcaacggcgcctcctcttcgtcgacccccgatcttccacatctgcgc
atccctctgtccgccctgcaggagggggggggcgaggcagagagggagaacggagccagc
gggccgggctgcgagagggaggtctgggtctctgtcttccgttacttgagtcgggcagat
ctctgcgtctgcatggccgtctgcaagaactggtacaaatggtgtttagacaagcggcta
tgggcccggatcgacctgagcatcaaacgcaccgtgactcctcaggctctgacgggcatc
ataaagagacagccaatcacactcgatctctcttggaccaacatctctaaaaaacagctc
agctggctcgttggccgacttcctgcgctgaaggatctgatgctggccgggtgttcatgg
ttatctatttccgctctctgctcctctgcgtgccctctcctccgctctcttgacctgcgg
tatgcagacggagtcaaagactctcagatcagggatctagtcacccctccaggttgtgac
aatcgcagtcagttgcgcagcatgcagtgtctgcgtctagccggcctggacatcagcgac
tccaccctgcgcctggtgatccgccacatgccacatttaacaaaactggacatctcccac
tgcaacaacctcacggacaactccatcaacctgctgactgcagtgggctcctccacccgg
aacaccgtcacagaactcaacctgggaggttgcagtaaactgtcagatacgtgtctaaag
tatctccgccgcctcgcctgcatctcgctgctcgacctgcgaggctgtaacggcgtctcc
cgaaaggcctgtgaggccttcatctccgagctgtcagtcaacatgctctacttcctatca
gatgataaactgatccagaggatatcctag
DBGET
integrated database retrieval system
