Gambusia affinis (western mosquitofish): 122824297
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Entry
122824297 CDS
T07758
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gaf03036
]
122824297
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122824297
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
122824297
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
122824297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Mu_Gam-Sipho_Gp157-TOTE
Psb28
Motif
Other DBs
NCBI-GeneID:
122824297
NCBI-ProteinID:
XP_043960664
LinkDB
All DBs
Position
LG21:complement(7789673..7812283)
Genome browser
AA seq
1956 aa
AA seq
DB search
MINVYNYLPKYQQGLKKTLKLGLELDDFLLLVYREFGLPPWQKFCLVTTDRTAVDHVKFK
ELQDNSTLYLLQSEDQDLPVAAEEVINFVPHYNTLIESGTFEYFAEGQKSLPCSLAELVD
NSLSATAKNTGVRTIEIRLLFDKTFGKPAIVVLDNGCGMTSKQLNNWAVYRLSKFTRENS
AFESERENYTRPDPVPRSLNSDISYFGVGGKQAAFHIGNSVRMISKPRNSPDVHELVLSK
DEFEKKEKNKEDVYKGTILNRKPGDFSHITHEDGFLQDIIKEETRKESFTAVVITGVCPD
HITYLKDDFHEWTRQLAHIYHYYIHGVNGNHKMDQSQKSDISSNIDILVTLREKPPKGLR
QKNLREVQDDLQTLYINSAVDTFEFKASTPDGGILDGILRYHPFLYDKETYPKDLQAPVE
EDDDENESGTMNRARGKRDIFECFWNGRLIPYTTVSEFDWCRRPNKSTLPLECFSRFSGV
LFTNDKFRVNASKQKFMDLELKLRHKDALFTPVFNVQKASKNRNIQKEFIQWLEKCHRQF
DKQVKFLGYVKTATRPDVSSKKLQHPWAVFSAIELDGKIYKAGDLVKSQKTQPIYYGKVN
KFFLYGDHEGDVFATGGEVEITRVPEALYDNYTRIIPISKIDRSATIESINKYIETDIDK
LPTKLGVTWPEGNPLPQNAVIPAGTLLGPLAVEILNRNEKSISSRINTGGHGGGIRLNVG
LRIFFHGSKVKQPEEICYFRAQYVSGHGHWFKKKEPLTHLGKYTLTLQAELSDSNSNNPK
TSYGGEELPSYEHKFTVKEGNAENFTIGTLNPSLRIGVPFSIPMQMTDSYGHPTKPPPNL
RPVLECSDLEVSFETVGASGNSFTIKGVKVRGKVQNYQQSRNFNLKVTLPGLKNETQTIK
ISPFPGNPHSLLVKPEIKPVKVENGNPFSFTVEVHDESGNITANAKQIVRCQIPGLKLAV
IDCSSTGTGQIVTEPINLKIINGEPQMLQAKFDMPSQKHVVAITTDLKVMPSCRVSRMEL
FCQGEERLQLKHEEKIQWQAGGVLENLLFKLYDESGQEVKVTPEIASNIKVNWTGDIDQR
ALITGRLPDIQVPTKVQEERFHQVSYRDHSVSFSFTIVPCPDEPARLKATVPENTVELGE
TVTAPIKLQLVDQYDNVTNSLTSDCVTSMAVEAEGLNKSNIVFIWEESSSSVAVSGICFN
SGPLGTREVCFSYRDYTEHINFKVIAGTPAKLKLLSGPEMPLQILNGTGISTPFVVQLCD
EWENPSPDQRVVVETRASPSTVKVTTSVTSQPVDAEGKAAFTIIHVKGLKGYYQLEFVGC
FNRKPIPGPHVNFNIIPDPNKPVTLSVNYDASARFLAGGTFPVFSVAVMSDAGSVMTAFK
PADLSMWYWSGESLTRPDSATMLKCSKPMENEDKSCYYFRDKKIPQSVGTYTIQFSLRIE
KTEVLFSNQININVVANQPFKLGPECQPQTPVVSYSRDIANRTLVENMTLKIMDQCDNPT
GQNLNGKVLVSIKCPDGEQSRILPLLEEVSTTQINLKDGSIHIKRLAIRENSPGENGRRY
ILIFKPEVAMPPTSLSPFELPFHFYNDSENQRKVSELTKKKDELIVNSEKLNQTCSSLAR
LRELLTKNVLDANKKEEALKKVLEESRIQVLQLSSIQNIDSLLREKTVEKERIESTPRRV
FPLPNRSGPDILGKVGHLAHISNEDAAWVISWHLSSEMDCVITKTTAEAQRIFRSEHGRQ
QVMALDSIYVHPGSSSCRPLPHMKHGRELFRPVGNPLYARNLLIYTTEEESCELVFKNIL
GNTILMDDIESATNYRKAVIQNGNYCPTILTRDGNRLLSSGKFGGTQNKAPSEIAKVFGA
PLPPRYDTLQKEIELLIQYRSTSEKKINEEARRNNTIQKLCEIQQEMEKTKKELEEIERQ
LASVKSGKRGPEDISDPYGLMIKRPRQRSTDTPERF
NT seq
5871 nt
NT seq
+upstream
nt +downstream
nt
atgattaatgtgtacaactacctgcccaaataccagcagggtttgaagaaaactctgaaa
ctcggtttggaactagacgactttcttctacttgtgtacagggaatttggtcttcctcca
tggcaaaaattttgtttggtaacaacagacagaacagctgttgatcatgtcaaatttaag
gagcttcaggataacagcaccctctacttgttgcaaagcgaggaccaagaccttccagtg
gcagctgaagaagtcatcaactttgttcctcattacaacacgctaatcgagagcgggaca
tttgagtattttgctgagggccagaaatcactgccttgctctcttgctgagctggtggac
aactctctttcggctacagctaagaacacaggagtcaggacgatagaaatccggctgctt
tttgacaaaacatttggaaagcctgctatcgtcgtgttggacaatggatgcgggatgacc
tccaagcagctcaataactgggctgtttacagactctctaagttcacaagggaaaacagc
gcatttgaaagtgaaagagaaaattacactcgtcctgatcctgtacctcgcagtctcaac
agtgatatatcctactttggagttgggggcaaacaagcagcgttccacattggaaactca
gtcagaatgatcagcaaaccaagaaactctccagatgttcatgagctggtgctatcaaag
gacgaatttgagaaaaaagagaagaacaaagaggatgtttacaaagggactatcttaaac
aggaagcctggtgacttctcgcacataacacacgaggatggcttccttcaggacatcatc
aaggaggaaaccaggaaggaaagcttcactgctgttgtcataacaggagtctgtcctgat
cacatcacctatctaaaagatgattttcacgagtggaccagacagctagcgcacatttat
cattattacattcatggagtcaacggaaaccacaaaatggaccagtctcaaaaatcagac
atcagttcaaatattgatattctggtaactttgcgggagaaacctcctaaaggtttgcgt
cagaagaatctcagagaagtgcaggatgacttgcagaccctgtacattaactcagctgta
gacacatttgagttcaaggcctccactcccgacggcggcatcttggatggaatcttgaga
tatcatccatttctttacgacaaggagacctaccccaaagatcttcaagctcctgttgag
gaagatgatgatgagaatgagtctggaaccatgaatcgggccagagggaagagggacatc
tttgagtgtttctggaatggacgactcatcccttacaccacagtttccgagttcgattgg
tgccgtcgacccaataaaagtacattgcccctggagtgtttcagccgtttctctggggtg
cttttcaccaacgacaaattccgggtcaatgcaagcaaacagaagtttatggacttggag
ctgaaactaaggcacaaggatgccctttttacccctgtttttaacgttcagaaggcctca
aaaaatcgaaatatccagaaagagttcatccagtggcttgaaaaatgtcacagacagttt
gataagcaggtaaagttccttggctatgtgaagactgcgactcgacccgatgtgtccagt
aagaagttgcagcatccctgggcggtgttctccgctattgaattagatggcaaaatatac
aaagcaggggatcttgtgaaatctcagaaaactcagccgatttattacggcaaagtgaat
aaatttttcctgtatggagatcatgaaggagatgtgtttgccaccggtggagaagtggaa
atcactcgtgtgccagaggcgctttatgacaattacaccaggattatacccatctccaag
attgaccggtctgctacaattgaaagcattaataaatacattgagaccgacattgacaag
ttgccaacaaagctgggcgtcacgtggcctgaagggaatcctttgccacaaaatgctgtt
attcccgctgggactcttttagggcccttagctgtggaaattcttaacagaaatgagaaa
tcgatctcatccaggattaatacaggaggtcatggtggagggataagactgaatgttgga
ctcagaatattctttcatggttccaaagtcaaacaacccgaagagatttgttatttccgt
gcccaatatgtatctggtcatggacactggttcaaaaaaaaagaacccctgacccatctg
gggaagtacactctgactctacaagctgagttaagtgacagcaactccaacaaccccaag
acgtcctacggcggcgaggagcttccgagctatgagcacaagttcacagtcaaagaggga
aatgcagagaactttactattggtacactgaacccctctctgcgcataggagtgccgttc
agtattcccatgcagatgactgattcttatggccaccccacaaaacctcctccaaatctc
cgacctgtgctcgaatgcagtgatctggaagtgagttttgagacggtgggcgccagtggg
aacagctttaccatcaaaggtgtcaaagtcagagggaaagtccagaattaccaacagtcc
aggaacttcaatctgaaagtgacactgccagggttgaaaaacgaaacacagactatcaag
atcagtccctttcctggcaatccacattcccttcttgtgaaaccggaaataaaaccagtg
aaagtggagaatggaaacccatttagttttactgttgaagttcacgatgagtctggaaac
atcacagccaacgctaaacagatagttcgctgccagattccagggcttaagttggcagtg
attgactgcagcagcacaggaaccggccagattgtgacagagcctataaacctgaaaatt
atcaatggagagccacaaatgctgcaagctaaatttgacatgcccagtcagaaacatgtt
gtagccatcacaacagacctgaaagtcatgccaagctgtcgagtctcccggatggagctt
ttctgtcagggagaggaaaggctgcagctgaagcacgaggaaaagatacagtggcaagct
ggaggggtgctggaaaacctcctttttaagctctatgacgagtctggccaggaggtgaag
gtcactcctgaaatagcctccaacatcaaggttaactggacaggagacattgatcagaga
gctttgataacgggaaggctgccagacattcaggttcccacaaaagtccaggaagagcga
ttccaccaggtctcctaccgggaccacagtgtgtctttcagctttaccattgtgccttgt
ccagatgaaccagcccgactgaaggcaactgttcctgagaatacggtggaactcggtgaa
actgtcactgcacccataaagttgcagcttgtggaccagtacgacaacgtcaccaatagc
ctgacctctgactgtgtgacgtcaatggctgtggaagctgagggtctcaataaatcgaac
attgtattcatatgggaggagagcagcagttctgttgcagtctctggaatttgtttcaac
tcggggcctctggggaccagagaagtttgcttcagctaccgcgactacacagaacatatc
aactttaaagtaatagccggaacccccgccaagctaaaactcctcagtgggcctgagatg
cctttgcagatcttgaatggtacaggtatttccacgccattcgttgtgcagttgtgtgat
gagtgggaaaacccttccccagaccagagagtggtggtggagacaagagcttcaccctca
acagtaaaggtgacgacatctgtcacttctcaacctgtggatgcggaaggaaaagcagcc
tttacaattattcatgtgaaagggttaaagggatactatcaactagaatttgtagggtgc
tttaacaggaaacccatccctggtccacatgtgaacttcaatatcatccctgatcccaac
aaacccgtcacactttcagtaaactacgacgccagtgccaggtttctagctggaggcaca
ttccctgttttctctgtggccgtgatgtctgatgcagggagtgtgatgacagcttttaag
cctgccgatttgtccatgtggtattggagtggagagtccttgacacgtccagattcagcc
actatgctgaagtgcagtaaaccgatggagaatgaggacaaatcctgttattacttcaga
gataaaaaaatcccacagagtgttgggacatacaccatacagttctccctgcggattgaa
aaaacagaagtcttgttcagtaatcagatcaacataaatgtagtggccaatcaacccttc
aaactaggacctgaatgtcagccacaaaccccagttgtttcctacagcagagacatcgcc
aaccgaactttagttgagaatatgactctgaagattatggatcagtgtgataatccaact
gggcagaacctgaacggcaaggtgttggtctccataaagtgtcctgatggggagcaaagc
agaatcctccctctgcttgaagaggtcagcactactcaaataaacctaaaagatggaagc
atccacatcaaaaggctggcgatcagggagaacagtcctggagagaacggaagaagatac
attctcattttcaaacctgaagtggcgatgcctccaacatctctgagtccttttgaactt
cccttccatttttataacgactctgaaaaccaacgaaaagtgtctgaactgacgaagaaa
aaggatgagctgatcgttaattctgagaaactcaaccaaacatgttcctcgcttgccaga
cttcgtgaattgcttactaaaaatgtcctggatgccaacaaaaaagaggaagccctcaaa
aaagtgctggaagaaagcagaatacaagttttgcaactttcatctatccaaaatattgac
agcttactcagagaaaagacagttgaaaaggaaaggatagagagtactcccaggagagtg
tttcctctgcctaaccgcagtggaccagatatccttgggaaggtgggccaccttgcacat
attagcaatgaggacgctgcctgggtcatctcttggcacctgtcttcagaaatggactgc
gtcatcaccaagacgacagcagaagctcagaggatcttccgtagcgaacatggcaggcag
caggtcatggccctcgacagcatttatgtgcatccaggaagcagttcttgtagacctcta
cctcacatgaaacacggccgtgaactgttccgtccagttgggaacccgctctacgcgagg
aacttgctgatttataccactgaagaggagagctgtgagcttgtgtttaaaaatatcctt
ggtaacactattctcatggatgacatagagtctgccaccaattacaggaaggcggtcatt
cagaacggaaactattgtcccaccatattgacccgggacgggaacaggctcctctccagc
ggcaagttcgggggcacacagaacaaagcaccaagcgaaatagcgaaggtgtttggagcc
cctctacctccacgctatgacacactgcagaaggagatagagttgctcattcaatatcga
tcaacttcagagaagaaaataaacgaggaagctaggcgtaataatacgatacagaaactt
tgtgaaattcaacaagaaatggagaaaactaagaaggagctggaggagattgaaaggcag
cttgcatcagtgaaatcagggaaacgaggacctgaagacatttcagatccttatggcctc
atgataaaacgcccaagacaaagatccacggatacgccagagagattttag
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