Gambusia affinis (western mosquitofish): 122824890 Help Entry 122824890         CDS       T07758                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism gaf  Gambusia affinis (western mosquitofish) Pathway gaf04115   p53 signaling pathway gaf04145   Phagosome gaf04148   Efferocytosis gaf04350   TGF-beta signaling pathway gaf04510   Focal adhesion gaf04512   ECM-receptor interaction gaf04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:gaf00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     122824890 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     122824890 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     122824890 (thbs1b)    04148 Efferocytosis     122824890 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     122824890 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     122824890 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     122824890 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:gaf04131]     122824890 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:gaf00536]     122824890 (thbs1b) Membrane trafficking [BR:gaf04131]  Endocytosis   Phagocytosis    Opsonins     122824890 (thbs1b) Glycosaminoglycan binding proteins [BR:gaf00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    122824890 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS EGF cEGF Laminin_G_3 TSP1_CCN Motif Other DBs NCBI-GeneID:  122824890 NCBI-ProteinID:  XP_043961681 LinkDB All DBs Position LG22:5737271..5751154 Genome browser AA seq 1169 aa AA seqDB search MKVTGICLLLMLCSCEGARVAESRDDNSVFDLFELIRVPSKNHGVTLAKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSVHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGPVFEIVS NGKANTLDIVYSTENKQQVVSIEEVDLATGSWKNITLFVQEDRAQLFAGCEEVNTAELDA PIQNILTQATPAGAQLRVGKGAVNDRFMGVLQNVRFVFGTTLDAILRNKGCQSAASSDTM IVTNLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLISMFKELKGLGVVVKELSNELRQLTN ENKLIKNRIGIHSGVCIHNGIVRKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNICEGTSVQTR DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGSGVITRIRLCNSPTPQLGGRDCVGEGRQT EKCEKSPCPINGNWGPWSPWGMCTLTCGGGIQTRKRLCNDPAPLHGGKECVGDAVDRQMC NKKACPIDGCLSNPCFSGAKCTSFPDGSWKCGKCPVGFAGNGIKCKDVDECKEVPDACFE FNGVHRCENTEPGYNCLPCPPRYSGPQPFGKGVEQAVANKQVCTPRNPCLDGSHDCNKNA RCNYLGHFSDPMFRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL PNSGQEDYDKDGTGDACDDDDDNDSIPDDRDNCPFVYNPRQYDYDRDEVGDRCDNCPYNS NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYIYNVDQRDTDLDGVGDMCDNCPLEHN PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND GIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTERDDD YAGFVFGYQSSSRFYVVMWKQITQTYWSSKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW HTGNTAGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK TYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt atgaaggtgacaggaatatgtttgctgctgatgctttgttcctgtgaaggtgcgagagtc gcagagagtcgagacgacaatagtgtgtttgatttgtttgagctcatccgagtccccagt aagaaccacggggtcaccctggcgaaaggagacgacccgtacagccccgcctacaagatc ctcaacccggaccttatccccccggtccccgagagcgccttcagggacctgatcgactcg gtccacgccgaaaggggcttcctacttctgctcaacttcaagcagtttaaacggaccagg ggcagcctcctgaccgtggagaagcgagacggctccggacccgtcttcgagatcgtctcc aacggcaaggcgaacaccctggatattgtttactccaccgagaacaagcagcaggtggtt tccattgaggaggtggatctggccaccggtagctggaagaacatcacgctcttcgtgcag gaggaccgggcgcagctgttcgcaggatgcgaggaggtgaacaccgccgagctggacgcg cccatccagaacatcctgacgcaagccactccagccggcgcgcagctccgagtcgggaag ggagcagtgaacgacaggttcatgggggtgctgcaaaacgtgcggtttgtttttggaaca acgctggacgcgatcctgcgcaacaaaggatgccagagcgctgcttcaagtgacacaatg attgtgactaacctgaacggctcctctgccatcagaacagagtacactggacacaaaact aaagacctgcagatggtgtgtggcttctcctgtgaggatctgatcagcatgttcaaggag ctgaaaggcctcggtgtcgtggtcaaggagctgtccaatgagctccgccaactgacaaat gagaacaagcttattaagaaccgcattggcatacatagtggcgtctgcatccacaacggc attgtgcgcaagaacaaagacgaatggaccgtcgatgactgcactgagtgcacttgtcag aactctgccaccgtgtgccgcaaaatctcctgccctctgatcccgtgtgccaacgccacc gtccccgatggcgaatgctgtcctcgttgtggaacaccgagtgactatgctgaggacggc tggtcgccctggtctgaatggactcattgttctgtgtcatgtgggcggggcatccagcag cgtgggcgctcttgcgaccgtatcaataatatctgcgagggcacctcggtgcaaacccgc gactgctacctccaggagtgtgacaagcgcttcaagcaggacggaaactggagtcattgg tcaccctggtcgtcgtgctcagtcacctgtggttctggtgtcatcactcgaatccgcctc tgcaactcccccacccctcagctgggaggcagggactgtgtgggagagggccgccaaact gagaagtgcgagaagtctccatgtcccattaacggtaactggggaccctggtcgccttgg ggtatgtgcaccctcacctgtgggggtggaattcaaactcgtaagcgcctgtgcaatgat cctgccccactgcatggtggtaaagagtgtgttggtgatgccgtagacagacagatgtgc aataagaaagcttgcccaatagatggatgcttgtccaatccttgcttttctggagccaag tgcactagtttccctgatggttcctggaagtgtgggaaatgcccagttggcttcgcagga aatggcataaagtgcaaagatgttgacgagtgcaaggaggttccagatgcgtgctttgag tttaacggtgtgcaccgctgtgagaacacagagccaggatacaactgtctgccctgtcct cctcgctactcaggaccccaaccatttggcaaaggtgttgagcaagctgttgctaataaa caggtgtgcacgccccgtaatccgtgcctcgatggaagccatgattgcaacaaaaacgct cgctgcaactacctcggacacttttccgaccccatgttccgctgcgagtgcaagcctgga tatgctggcaatggtcatatctgtggagaggacacagatttggacggatggcccaatgct gatctggtctgtgtagagaatgccacctaccactgtaaaaaggacaactgtcccaatctt ccaaactcagggcaggaagattatgataaggatggaactggagacgcatgtgacgatgat gatgacaatgacagtattcctgatgacagggacaactgcccgttcgtgtacaatcccagg cagtatgattatgaccgcgatgaagtgggggatcgctgtgacaactgcccttacaacagc aacccagaccagactgacactgacaacaacggcgaaggagacgcctgtgctgtggacatt gatggagatgggatattgaatgagaaggacaactgtccctatatatacaacgttgaccag agagacacagatctggacggagtgggagacatgtgtgataactgtcctctggaacataat cccgatcaggtggattcagatgatgacagagtgggagacaagtgtgacagtaaccaggac atcgacgaggacggacaccagaacaacctggacaattgcccatatattcccaatgccaac caggctgatcacgacaaggatggcaagggagatgcctgtgaccatgatgatgacaacgat ggcatccctgatgacaaagacaactgtagactggctttcaaccccgaccagctggattct gatggcgatggtcgtggagatgcttgcaaagacgactttgaccaagacaacgttcctgat atctatgatgtttgtcctgagaacttcgatatcagtgagacagacttccgcaagttccag atggttcctctggatccaaaaggcacctcccagattgatcctaactgggttgtccggcat caaggcaaagagctggttcagactgtcaactgcgatcctggcattgcagttggttaccac gagttcaacgctgtggacttcagtggaactttcttcataaacacagagagagatgacgat tatgctggctttgtgttcggctaccaatccagttccaggttctacgttgtgatgtggaag cagatcacgcagacctactggtccagtaaacccaccaaggcccagggatactcaggcctg tccatcaaagtagttaactccaccaccggcccaggagagcaccttagaaatgctctctgg cacacgggcaacaccgcaggacaggtccgcactctctggcacgaccctaaaaatgtcggc tggaaagacttcactgcctacaggtggcatctaattcacaggccaagaacaggactgatc agagttgtgatgtatgagggtaagaagatcatggcagattctggtagcatctatgacaag acgtatgcaggtggcaggctaggtctttttgtcttctcacaagagatggtttatttctca gacctcaagtatgaatgcagagatgcataa

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