KEGG   Gambusia affinis (western mosquitofish): 122826177
Entry
122826177         CDS       T07758                                 
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
  KO
K02084  apoptotic protease-activating factor
Organism
gaf  Gambusia affinis (western mosquitofish)
Pathway
gaf04115  p53 signaling pathway
gaf04210  Apoptosis
gaf05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:gaf00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    122826177 (apaf1)
   04115 p53 signaling pathway
    122826177 (apaf1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    122826177 (apaf1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz APAF1_C Beta-prop_EML_2 NB-ARC WDR55 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 APAF-1-like_WHD Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR75_1st CARD NBCH_WD40 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st RMC1_N Beta-prop_EIPR1 Ge1_WD40 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_NWD2_C Beta-prop_WDR35_TULP_N PEP5_VPS11_N CARD_2 WD40_RFWD3 WD40_like Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_WDR11_2nd AAA_16 NACHT AAA_22 Beta-prop_Nup120_160 LRRCT_2 Dark_WHD
Other DBs
NCBI-GeneID: 122826177
NCBI-ProteinID: XP_043963661
LinkDB
Position
LG23:13150348..13183870
AA seq 1299 aa
MALQERTRRSLLRLRHELEQNIKPQDLMDHMISDGVITVDEEEKVRIKPTRKDQAAALIE
LLLRKDDRSFISFYNALVKETYYDLAKPLYQDLPGVSFNGRKGSFDSSETYVQIMLSEGG
VPQRPVVFVSRPELLNQVRMKLDLLQKDAGGWVTVFGMAGSGKSVLAAEAVRDQRLIEEC
FPSGVHWLSIGQLEKSDLLVKIQSLCFRLEQSLDSQSQQRPPTSLDEAKERLRFLMLRRY
PRSLLILDDIWDSSVLKVFDIHCRILLTTRNRSLTDSVSGAKYEVEVESGLDDRKALEIL
ALYTKMNQNALPVEARDIVKECKGSPLVVSLVGALLKDKPNRWDYYLRQLRQKQFKRIRK
SSSYDYDALDQAMAASIEVLPDEHRELYKDLTVLQKDVKIPAKILCVLWDLEPEEVEDIL
QEFVNRSLLFVDNNSRLNLYYLHDLQLDFLVEQNRDQIESLHSKVVNQYNHHYREAAPTA
GDEARLYWIRFLTYHMAKAQMFQELYSLMFSLDWVRMKAKVLGPAPLINDYMEYGSILDK
ENSEVCSQFQEFLSLNGHHLEQRPFPDVVQLALSQPHSSAVYKQAREQALHLANAGKLYF
ELINKSSIENLSRLVIHPHLGSISSACFSHDGTKIASCGASKNVKVFKSTSGEKLIEIQA
HDEEVLCCAFSPDDHLLATCSSDRKVKVWNIQQGKLLRIFEEEHEEQVNHCEFTNMSQRL
LLATCSNDSILNVKIWNLNKPSSQNTMFGHFEPVNHCCFSPDDAYLSTSSNDGTVKLFQV
SAANEWKTIDVKSFLSESDDEDVLVKCSTWTADGKRIICAARNAALVFDVQTSDMLLDIK
TNRLSTVQYCHACPASNLLALAFSNYAIELWDLEEKKKRADCSGHLSWVQRVQFSKDGSQ
LLSCSDDQTIRLWETEKVHTSSAVCLKRDSDVLFNGEEIIVSAADNCNRLQVRDGRTGSV
LFQSQELPFRIRSTCMCRNPSAVVLGQENGVVQVSGLTASRVLRTIGCRIRQLLTSCREV
LLAVAQCTGRVQVLALPSGKLLATLLGHTKTVLHCQFCQNGQTLITSSEDTTIRVWKWKS
GECKVLQGHKEQVRCFSLLSGSANDSRLLSWSFDGTVKVWDIESGEKLQDIRAHQGAILS
CHVSPDRCLFATTSADKTTKLWSCESWQCVFTLRGHQDCVRSCRFSWDSKRLATGDDNGE
IRIWSVTDGSLLKICSQESKDATDSVHGGWVTDLHFSPNNSVLVSTGGYIKWWNVARGES
LQTFYPTGSALKKIHVSPDFSTFVTIDNIGILYILKRVA
NT seq 3900 nt   +upstreamnt  +downstreamnt
atggcgctgcaggagcggacccggagaagtctgctgcgcttgcgccatgaactggagcag
aacatcaagccgcaggacctcatggaccacatgatcagtgatggtgtgatcactgtggat
gaggaggagaaggtccggattaagcccaccagaaaagaccaagctgcagcactgatcgag
ctgctgctgaggaaagatgatcgctccttcatttctttctataatgcgctggttaaagaa
acgtactacgatctggccaaacctctgtatcaagacttaccaggtgtctccttcaatgga
cgaaagggctcctttgacagctccgaaacttacgttcaaattatgctgagtgaaggtggc
gtcccacagaggcctgtggtgtttgtgagcagaccagagctgctgaatcaggtcaggatg
aaacttgatttgctccagaaagatgccggcggctgggttacggtgttcggcatggctggg
tcaggaaagtctgtgctcgctgccgaggctgtcagagaccagagactcatcgaagagtgt
ttccccagtggggttcattggctgtccatcggtcagctggagaaatcagacctgctggtg
aagatccagtcattgtgttttcgcctggagcagagcctggattcccagtcgcaacagcgg
ccacccacctctctggatgaagcaaaggagcgcctgcgcttcctgatgctgcgcaggtat
cccagatctctattaatcctcgatgacatctgggatagctcggtgctcaaagtgtttgat
attcactgtcgaattcttctgaccaccagaaacaggagcctcactgattctgttagcggt
gccaagtatgaggtggaagtagaaagtggtctggatgacagaaaggcgctggagatcctg
gccctgtacactaaaatgaatcaaaacgcgcttcctgtggaggctcgtgacattgtcaaa
gaatgtaaaggctctcccctggttgtgtctctggtcggcgctctgctcaaagacaaaccc
aaccggtgggattactacctccgccagctgcggcagaagcagttcaagcgcataaggaag
tcttcatcctacgactacgacgccttggatcaggccatggcggcgagcatcgaggtttta
ccagacgaacatcgggaactctacaaagacctaactgtgctgcaaaaggacgtcaagatc
cccgctaagatattgtgtgttttgtgggatctggagccagaggaagtggaagacattctc
caagagtttgtcaacaggtccctgctttttgtagacaacaacagtagactgaacctgtac
taccttcatgacctccagttggacttcctggtggagcagaaccgagatcagatagagagt
cttcacagtaaggtggtgaaccagtacaaccatcactacagagaggctgctcccaccgct
ggagacgaggctcgtctttattggatcagatttctcacctatcacatggccaaagcccag
atgttccaggagctgtattcgctcatgttctcgctggactgggtcaggatgaaggcgaag
gtactgggtccagcgcccctcatcaacgactacatggagtacggatccattctggacaaa
gagaacagtgaagtttgcagccagttccaggagtttctgtcgctgaacggccaccaccta
gagcagcgtccgttccctgacgtcgtgcagctcgctctgtctcagccgcactcctccgcg
gtctacaaacaggctcgggagcaggcgctgcacctggccaacgctgggaagctctacttt
gaattaataaataagagcagcatagaaaatctgtcccgtttggtgatccaccctcacctg
ggctccatctcctctgcctgcttctcccacgatggaaccaaaatcgcttcttgtggagcc
agcaaaaatgtgaaggtatttaaaagtacctcaggtgagaagctgatagagatccaggct
cacgatgaagaagttctctgctgcgccttctcccctgatgaccatcttctagcaacctgc
tcaagtgaccgaaaagttaaggtgtggaacatccagcaaggcaaactactgaggatcttt
gaagaggagcatgaagagcaggtgaaccactgcgagttcaccaacatgtcacagcgcctc
ctactggccacatgctccaacgacagcatcttaaatgtcaagatttggaatctgaacaag
ccgtcgtcccagaacaccatgtttggtcacttcgagccggtgaaccactgctgtttctct
cctgatgatgcttatttgtccacttcctccaatgacggcaccgttaagttgttccaggtg
tctgcagccaacgagtggaagacgatcgacgtgaagagcttcttgtcagaaagcgatgat
gaggacgttcttgtgaagtgcagcacctggaccgcagatggcaaacgcatcatatgtgcc
gccagaaatgctgccttggtgtttgacgtccagacgtcggacatgttgctggatattaag
acgaaccgtctgagcacagtgcaatactgtcacgcctgtcctgccagtaacctgctggca
ttagcattctcaaattatgccattgagctgtgggatcttgaagaaaagaagaagcgggcg
gactgcagcggccacctgagctgggtccagcgggtccagttctctaaagacggctctcag
ctgctgtcctgctccgacgaccagacaatcaggttatgggagaccgagaaggtccacacg
tcctcagccgtctgcctgaagagagattcggacgttctctttaatggtgaggaaatcatc
gtgtcggctgcagacaactgcaacagactccaggtgcgggatggcagaacaggatcggtg
ctgttccagtcgcaggagctgcccttcagaatccggtctacatgtatgtgcaggaatccg
tctgcagtggttctgggacaagagaacggagttgtgcaggtgtcagggctgacagctagt
cgggtcctgaggacgattggctgcaggatccgtcaactgctgacctcctgcagggaggtg
ttgctggctgtagctcagtgcacaggcagggtgcaggtgttggcgttgccctcagggaag
cttttagccactctgctgggacacaccaagaccgtgctccactgccagttctgccagaat
ggacaaacgctcatcacctcatccgaggacaccaccatcagggtgtggaagtggaaatca
ggcgagtgtaaagtacttcagggtcacaaggagcaagttcgatgcttctctttgctctcc
ggctcagcaaatgactcgagactgctctcctggtcctttgatggaactgtgaaggtgtgg
gacattgagagcggagagaaactgcaggacatcagggctcatcagggagccattctgtcc
tgtcacgtctcgccagacagatgtctctttgcgaccacctctgctgacaagaccactaag
ttgtggagctgcgaatcctggcagtgtgtcttcaccctgagaggtcaccaagactgcgtc
cgaagttgccgtttctcctgggacagcaaacgcctcgctacgggagacgacaacggagag
atccgaatctggagtgttacagatggctctttactgaagatttgttcccaggaaagtaaa
gacgccactgattctgtacatggaggttgggtgactgatctgcacttctccccaaacaac
tctgtgctcgtttctaccggaggctacatcaagtggtggaacgtggcgagaggtgaatcc
ctgcagacgttttatccgacaggaagcgccctcaagaagatccacgtgtcgcccgacttc
tccaccttcgtcaccatcgacaacatcggtatcctctacatcctaaagagggtagcatga

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