Gambusia affinis (western mosquitofish): 122828985
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Entry
122828985 CDS
T07758
Symbol
smcr8b
Name
(RefSeq) guanine nucleotide exchange protein smcr8b
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122828985 (smcr8b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gaf04131
]
122828985 (smcr8b)
Membrane trafficking [BR:
gaf04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
122828985 (smcr8b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
Motif
Other DBs
NCBI-GeneID:
122828985
NCBI-ProteinID:
XP_043969048
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Position
LG04:30596321..30606721
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AA seq
871 aa
AA seq
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MIGSPDLLPFTGSGGFEEEGEEPEVHSLPEEFSVRLLPPHNPWSTAAQFHRDFILVAEFS
EQVGPKPVLTIPNDPKVIGSFDLNHFSVRIMSVDYQASGPGHTAPAPPGPRLSFSEDSRV
ILGDSADDSFAYVHHLTLYDLEARGMVRPFCMAYVCSDRAKLMENFSELSECFSQASDSL
KTGNRQAFSSELQRKLQELEYRRRALLQDTHASTGAGGRADELEALEHLILNHRELLRQV
TSYPNRKLQQPDFLPYDMADLPSEPSSPCLPSSASCRSESLLKPLEELCNFYFLSLVKNQ
LADTERRLRGDRSVLRTARVSQLLSRKLKLTNFLFELCCPVDAEEEEEEDEAERVLGSTV
GAVGGQSEKHGGELFSCVEEIQIKMEGGGGGRATPDPSAFTDMMGSESSSDSIEVLGTEK
SYRSQRGAVVSDSRETRVRTTDVVLQHAAGDAGAGRLRAPARRANSEDSIEVLSTTESIV
PDDLSAITEEEAEHHTLTNGFEEEEESEADCKLDEVLKEERMKNTATAESAGRKELLFNV
PDKDNSLTEKSNEVHKDKINKLLQAGDAVESRQKKLRPVFDLHIKMAPKSVGAEGALRTP
PCAPLRLLSVDEFSDCTSFTSSSEPPSPTTVNLTSTCVDKKRKRRRAGLRALRFIKQLSF
SQHAIFCLLIGRPLVVIGGDERLVRKLVDGLRLFLPAPGADGSAVMSCLATPLQLTDLLT
WRLIGIHRSSSSASSSILQSLTQLSRYIALLDLDQKTLRCPSYAGSLVGFLANPHTGISR
GLTYLLHLESCLTALANRVLLQTFIAASQLHRAIAEEKDSQQAPQLCSSENDFRVMHFLT
DLIAQRHTGHGPPPFRFSYSSVQLHRNTYPT
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgattggctcaccggacctgctgcctttcaccggcagcggggggtttgaggaggaagga
gaggaaccggaggttcactctctgcctgaggagttttctgtccgccttttgccgcctcac
aacccctggagcacagcagcccagtttcaccgggactttatactggtggctgaattctca
gagcaggttggtccaaagcctgtcttaacaataccaaatgatccgaaggtcatcggctcg
tttgacctcaaccacttctccgtccgcatcatgtctgtggactaccaggcgtccggcccg
ggtcacacagcccctgctccgcctggaccccgcctcagtttcagcgaggactccagggta
atcctgggagactcagcagacgactcgtttgcgtacgttcatcacctgaccctgtatgac
ctggaggctcgggggatggtgcgacctttctgcatggcctacgtctgttcggaccgggcc
aagctgatggagaacttctctgagctgtccgagtgtttttctcaggcctctgacagtttg
aagactggaaacagacaagcgttctcctctgaactgcagagaaagctgcaagagctcgag
tacagacggagggccctgctgcaggacacacacgcctccacaggagcaggaggcagagct
gatgagctggaagctttagagcatctgatcctgaaccacagagagctccttcgccaggtc
acatcctacccaaacaggaagctccagcagcctgacttcctgccctacgacatggccgac
ctgccgtctgagccgtcctctccctgccttccctcctctgcctcctgcaggtctgagtcg
cttctgaagccactggaggagctctgcaacttctacttcctgtccctggtgaaaaaccag
ctggcagacacagagcggcgtctgcgtggcgacaggagcgtcctgcgaactgctcgcgtc
tcacagctactgtccaggaagctgaaacttacaaacttcctgtttgagctgtgctgccct
gtggatgctgaggaggaagaggaggaggatgaagcagagagggtcttggggagcaccgtg
ggggctgtgggaggtcaatcagaaaagcatggtggggagttgttctcctgtgtggaagaa
atacagataaagatggagggagggggaggtgggagagcgacccctgaccccagcgcgttc
acagacatgatgggcagcgagagcagcagcgacagcattgaggttctcgggacagagaag
tcgtaccggagtcaacgtggagccgttgtgtccgacagcagagaaacccgtgtcaggacc
acagacgtggttctccagcatgcagcaggagacgcaggcgccggacgcctgcgagcccct
gccaggcgtgccaacagcgaggacagcatcgaggttctcagcacgactgagtccatcgtc
cctgacgacctgtccgccatcacagaggaagaggcggagcatcacactctgaccaatgga
tttgaggaagaggaagagtcagaggctgattgtaagcttgatgaagtcctcaaggaggag
aggatgaagaacactgctactgcagaatctgctggaagaaaagaacttttgttcaatgta
ccagacaaagacaattcactcacagagaaaagtaacgaagtccataaagacaagatcaat
aaactgctccaagctggagacgcagtggagtcgaggcagaagaagttgaggccggtgttt
gacctccatataaaaatggctccgaaaagcgtcggggcggagggagctctgcgcacgccg
ccctgcgctcctctgaggctgctcagcgtggacgagttctccgactgcaccagcttcacc
agcagctcagagccgccgtctcccaccacagtcaacctcaccagcacatgtgtggacaag
aaaaggaagaggaggagggctggcctgcgagccctccggttcatcaagcagctctccttc
tcccagcatgccatcttctgtctgctgattggccggccgctggtggtcatcggtggagac
gagcggctggtgaggaagcttgtggacggcttgaggctcttcctgccagctcctggtgct
gatgggagcgctgtgatgtcatgtttggccacgcccctccagctgaccgacctgctcacc
tggaggctcataggaatacacagatcatcttccagtgcatcatcttccatccttcagtct
ctgactcagttgagtcgttacatcgctctgctggacctggatcagaagacgctgcgctgt
ccttcatatgccggatccctggtcggcttcctagccaaccctcacaccggcatcagccgc
ggtctcacctacctgctgcacctggagagctgcctgactgcgctggccaaccgggtgctg
ctgcagaccttcatcgctgcttcccagcttcacagagccatcgctgaggaaaaggactcg
cagcaagcaccacaactctgcagcagtgaaaatgattttcgagtgatgcactttctgact
gacctgatcgcacagcgccacaccggacatggaccgccgcctttcaggttttcctacagc
tcagtgcagcttcacaggaacacatatccaacataa
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