Gambusia affinis (western mosquitofish): 122837604
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Entry
122837604 CDS
T07758
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04010
MAPK signaling pathway
gaf04020
Calcium signaling pathway
gaf04510
Focal adhesion
gaf04518
Integrin signaling
gaf04540
Gap junction
gaf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122837604 (pdgfrb)
04020 Calcium signaling pathway
122837604 (pdgfrb)
09133 Signaling molecules and interaction
04518 Integrin signaling
122837604 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122837604 (pdgfrb)
04540 Gap junction
122837604 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
122837604 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
gaf01001
]
122837604 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
gaf04090
]
122837604 (pdgfrb)
Enzymes [BR:
gaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
122837604 (pdgfrb)
Protein kinases [BR:
gaf01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
122837604 (pdgfrb)
CD molecules [BR:
gaf04090
]
Proteins
122837604 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_PDGFR_d4
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
Adeno_E3_CR1
Haspin_kinase
RIFIN
DUF3619
Motif
Other DBs
NCBI-GeneID:
122837604
NCBI-ProteinID:
XP_043983990
LinkDB
All DBs
Position
LG09:complement(13470799..13503944)
Genome browser
AA seq
1108 aa
AA seq
DB search
MRRLIASVLHLMVALTALVHFCPEVLSLKITPDDKEFVLAQGSSLTLICSGSSQANWALK
RDDSTYYLNQLDENMKSRYKIFELDTTSVALNLTSVNWMHTGVYQCIDDISDEIKEVAVF
VPDPEVWFVKSTHGMVTKTREESIIPCVATNPNITVILYEWDTKRPIKGHYVPSEGYRAQ
LEDRAYVCRGELNGEVKESQEFNVISIIVAEDINPYINSSKTVLKQGEPLTINCTVHGVE
LVFFSWDIPRTAVVKAEPQMYFSPKMHSCLTFPRTTVENSGNYVCHVQEMVAGVTASSSV
NITVLEHGFVGVKPAQWQNISAKIQENVELRVDIEAYPPPQVRWTKDGTTISGDKAITIR
QDQEIRYVTILTLVRVRAEHNGLYTVIISNEDDKKEVLFDLEVLVPADIKDLTDHHLPGK
RDVATCLAEGFPTPIIQWYSCVDMLKCSNNVTTAWQPLKPQPGVVSIQTNVSYDQARKVS
VVTSQAIFHKPHQVTVRCEAANQVGHVRAREVKLVSSTWLSHVAVLAAVLALVVIFILSI
IILIAVWRKKPRYEIRWKVIESVSQDGHEYIYVDPVHLPYDLAWEMPRENLVLGRTLGSG
AFGRVVEATAYGLTHSHSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLG
ACTKHGPLYLVTEYCRYGDLVDYLHRNKHTFLQCYAEKNQDSGCIISRGSTPLSQRKGYV
SFGSESDGGYMDMSKDEPSFYVPMQEQLDTIKYADIQPSPYESPYQQDLYQEQGGGRLDL
VIGDSPTLTYDDLLGFSYQVAKGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLARD
IMHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMN
EIFYSALKRGYRMAKPAHASDEVYEIMKKCWDEKFEKRPEFSLLVHNVGNMLMDSYKKRY
NQANENFLKSDHPAVARTKPRLSSPFPIANPAFGSPSPMTQSFPGRHGQSPRPGDGGREA
DTQEVIPSYNEYIIPLPDLKPDDVFTEVPSESPARYRPSCSLAVEEEADSTSQDTAETLP
EEDRVENTSERDALLGSMGTPEVEDSFL
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggctgatagcatctgtgctacacctgatggtcgctttaacagctttggtgcat
ttctgcccagaagtgctcagcctgaagatcacccctgatgacaaagagtttgtcctggct
caaggctcgtctctcaccctaatctgctccggctccagccaggcaaactgggcgcttaag
agggacgattcaacttactacctgaatcagctagatgagaatatgaaatcaagatacaaa
atctttgaacttgacacaacgtcggttgctctgaacctaacaagtgtgaattggatgcac
actggtgtgtatcagtgcattgatgatatttctgacgagataaaggaagtggccgttttt
gtaccagatcctgaagtttggtttgtaaagagcacccatggcatggtgacgaagaccagg
gaagaaagcatcatcccctgtgtggccaccaacccaaacatcactgtcatcctgtatgag
tgggacaccaagaggcccatcaaagggcattacgtaccgagtgaggggtacagggcccag
ctggaggacagagcatatgtgtgccgtggagagctgaatggggaggtcaaagagtctcag
gagtttaacgtcatcagcattatagtggccgaagacatcaacccttacatcaacagttca
aagacggtcctgaagcagggcgagccgctgaccataaactgcacggtgcacggagtggag
ctggtgtttttttcttgggatattccacgcactgcggttgttaaggctgaaccacagatg
tatttctccccgaagatgcactcctgcctgaccttccctcgcactacggtggagaacagc
ggaaactatgtgtgccacgtccaagaaatggtagcgggcgtcacagcttcttcaagcgtc
aacattaccgtgctcgaacacggttttgtgggggtgaaacctgctcagtggcaaaacatt
tcagccaagattcaggagaacgtggagctgagagtggacattgaggcctaccctccccct
caggttcgctggaccaaagacgggaccaccatcagcggagacaaagctatcaccatcaga
caggatcaggaaataaggtatgtgaccattctcacactggtgagggtgagggccgagcat
aatggcctctacacggtcatcatttccaatgaagacgacaaaaaggaagttctgtttgac
ctggaagtcctagttcctgctgacattaaagacctgaccgaccaccatctcccagggaag
agggacgtggcgacctgcctcgctgaagggtttccaactccgatcatacagtggtacagc
tgtgtcgacatgctcaagtgtagcaacaacgtcacaacagcatggcagccgctgaagcca
caaccaggggtggtgagcatccaaaccaatgtcagctacgaccaggcgcgtaaagtcagc
gtggtgacgagccaggcaatcttccacaagcctcaccaggtcacagttcgctgcgaggcc
gccaaccaggtcgggcacgtccgcgcgagggaagtcaaactggtgtccagcacgtggctc
tcccatgtggcagtgctggctgctgttctggccttagtggtcatttttattttgtccata
atcatcctcatcgctgtatggaggaagaaacctcgttatgaaatcagatggaaggtgata
gagtctgtgagccaggatggacatgagtacatttatgtggaccccgtccatctgccctat
gacctggcctgggagatgcccagagaaaacctggtgctgggtcgcacgcttggatcggga
gcatttggcagggtggtcgaggcaactgcgtacggtctcacgcattcccactccagcaca
aaggtggcagtgaaaatgctgaaatccacagccaggaggagtgagactcaggccctgatg
tccgagctgaagatcatgagtcacctgggacctcacctcaacatcgttaacctgctcgga
gcctgcaccaaacatggccctctctacctggttactgagtactgtcgctatggtgaccta
gtggactacctgcataggaacaagcacaccttccttcagtgctacgctgagaagaaccag
gacagcggctgcatcatttccagaggaagtacccccctcagccagagaaaagggtatgtg
tccttcggaagtgagagcgacggaggatacatggacatgagcaaagacgagccctccttc
tacgtgcctatgcaggagcagctggacacaattaagtatgcagacatccagccgtccccg
tatgaatccccctaccagcaggacctctaccaggaacaaggtgggggcagactggatcta
gtgattggcgactctcccaccctcacctacgacgatctcctaggcttcagttaccaggtt
gcgaagggaatggatttcctggcctcaaagaattgtgtccatcgtgacctggcggccagg
aacgtattgatctgtgaaggcaagctggtgaagatctgtgactttggcctggccagggac
atcatgcatgactccaactacatctccaaaggcagcacattcctgcctctgaagtggatg
gcaccggaaagcattttccacaatttgtacaccaccctgagcgacgtttggtcatatggc
attcttctttgggaaattttcactctgggaggaactccttaccctgatttgcccatgaat
gaaatcttctacagtgctttgaagagaggctacaggatggccaagcctgctcacgcctct
gacgaagtctatgagatcatgaagaagtgctgggatgagaaatttgagaagaggcccgag
ttctccctcctggtgcacaatgtgggaaacatgctgatggacagctacaaaaagagatac
aaccaagcgaatgaaaacttcctcaagagcgatcaccctgccgtggctcgcaccaaacct
cgcctctcctctccatttccaatcgccaacccagccttcggctctccctctccaatgact
cagtccttcccgggccgccatggccagagcccaaggcctggagacggcgggcgagaggca
gacacacaggaagtcatcccttcatacaacgagtacattattcctctcccagacctaaag
cctgacgacgttttcactgaagtgccgtcggaaagccctgcaaggtacagaccctcctgc
tctctggctgtggaggaggaggctgactccacatctcaggacacggccgaaactcttcca
gaggaagaccgagtggagaacacgagcgagagggacgcactgctgggctccatggggacg
cctgaggtagaagacagtttcctgtag
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