Gambusia affinis (western mosquitofish): 122842396 Help Entry 122842396         CDS       T07758                                  Symbol slit1a Name (RefSeq) slit homolog 1a isoform X1   KO K06838   slit 1 Organism gaf  Gambusia affinis (western mosquitofish) Pathway gaf04517   IgSF CAM signaling Brite KEGG Orthology (KO) [BR:gaf00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     122842396 (slit1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:gaf00536]     122842396 (slit1a) Glycosaminoglycan binding proteins [BR:gaf00536]  Heparan sulfate / Heparin   Axon guidance molecules    122842396 (slit1a) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  LRR_8 LRR_4 LRR_5 EGF Laminin_G_2 Laminin_G_1 LRR_1 LRRNT LRRCT LRR_9 EGF_TEN hEGF LRR_14 EGF_Teneurin EGF_DL_JAG LRR_EndoS EGF_PEAR1L EGF_3 LRR_NXF1-5 Motif Other DBs NCBI-GeneID:  122842396 NCBI-ProteinID:  XP_043992138 LinkDB All DBs Position LG13:complement(14742369..14836740) Genome browser AA seq 1544 aa AA seqDB search MPVGGFESSMVRLPRQWMWLLMFSALVVGNASACPALCTCSGTTVDCHGLGLKTMPRSIP RNTERLELNGNNLTRITKSDFAGLKYLRVLQLMENQITVIERGAFDDMKELERLRLNRNQ LQQLPELLFQKNPGLSRLDLSENFIQSIPRKAFRGATDIKNLQLDKNHISCVEDGAFRAL RGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCHLAWLSQWLRQRPTIGLFT QCASPPELRGLNVAEVQKHEFSCSGHQESSSLQPCSTGGGSCPAMCTCSNNIVDCRGKGL TAIPANLPDSMSEIRLEQNGIKSVPPGTFSPYKKLRRIDLSNNQISEIAPDAFQGLRSLN SLVLYGNKITDLPKGVFDGLYSLQLLLLNANKIHCVRANAFQDLQNLSLLSLYDNKIQTL AKGTFTSLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKRIGQI KSKKFRCSAKEQYVIPGTEDTHLNNVCNTDPVCPPKCRCESNVVDCSNLKLTKIPEHIPA STAELRLNNNELTTLEATGVFKNLSQLKKINLSNNKITEIEDGAFEGASSVFELHLTANH IDSVRSGMFRGLEGLRMLMLRNNKISCVHNDSFTGLHNVRLLSLYDNHLTTITPGAFDTL QTLSTLNLLANSFNCDCRLAWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVALPDFRCE EGQEESSCVPRPQCPSECSCLETVVRCSNKHLHTLPKGIPRNVTELYLDGNQFSVVPKEL ASFKYLQLVDLSNNKINSLSNSSFANMSQLTTLILSYNSLRCIPKMAFGGLHSLRLLSLH GNEISELPDGIFNDVTSLSHLAIGANPLHCDCHLRWLSDWVKTGYKEPGIARCAGPQGME SKLLLTTPAKKFECTGDVDNTVLAKCNPCLSNPCLNHGICHNDPMEIYRCNCPPGFKGKN CETALNGCVSSPCANGGTCQVTDEDEAEYRCSCLLGFEGPTCQINVDDCEDNDCESGATC IDGINNYTCFCPPYYTGEMCEEMEDVCAPGRSPCQHQSTCLISTSGPKCVCSPGYVGDDC SVNYDDCREHRCQNGAQCVDELNGYSCICPNGYSGQLCEVPPSPLSLCELADCQNNAPCV ERGGRALCQCPPEFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQANITLQVSTAEDNGIL LYNGDNDHIAVELFQGHVKVSYDPGSQPGHAIYSTETINDGQFHTVELVTFDQMVNLSID GGLPTTMDSFGAVRPLNGEAPLYVGGRGPLQNTPPSSAGMPVDVHSGTFRLWQIQNGSSF HGCIQNLYINNELQDFTKTQMKPGVVPGCEPCKKLYCVHGICQPDGLQGPVCHCQPGWSG AHCDQPALNPCQGSKCVHGKCIPLDLQSYRCECEEGYRGALCNQQGELFNPCRRLTCKHG RCQISDSGDAYCHCESGYTGELCDAESECRGEPVRDFYQVQRGYAICQTTRMVSWVECTG ACDTGSCCISQRMKRRKYTFECSDGTSFTEEVEKTIKCGCVGCM NT seq 4635 nt NT seq  +upstreamnt  +downstreamnt atgcccgttggaggttttgaatcaagcatggttaggctgcccaggcagtggatgtggctg ctgatgttctctgccctggtggtgggcaatgccagcgcctgcccggcactttgtacctgc agcggcaccacagtagactgccatggactgggtctcaaaactatgccaaggagtattccc cgcaacactgagagactggagctgaacggaaacaacctcacacgcatcaccaagagtgac tttgctggcctgaagtacctcagagttctacagctgatggagaatcagattacagtgatc gagcgaggggcttttgatgacatgaaggagctggagagactgcggctgaaccgtaatcaa ctgcagcagcttccggagctgctgtttcagaagaaccctggcctgtctcggcttgatctc agtgagaacttcatccaatctatcccccgaaaagcattcagaggagctacagacatcaaa aacctgcagctggataaaaaccacatcagctgcgtcgaggatggagccttcagagctctg agaggcctggaagtactaacgctgaacaacaacaacatcagcagcattcctgtctccagc ttcaaccacatgcccaaactccgaactttccgacttcattccaacaacttaaactgcgat tgtcacctggcctggctgtcccagtggctcaggcagaggccaacgattggcctgttcacc cagtgtgcttcacccccagaactcagaggactcaatgtggcagaggtccagaaacatgaa ttctcttgttcaggtcatcaggaatcttccagcttgcagccgtgcagcactggtggaggc tcctgtcctgctatgtgcacctgcagcaacaacattgtggactgcagagggaaaggtcta actgccattccagccaatctgcctgacagcatgtcggaaatacgtctggagcagaacggg attaagtctgttcctcctggaaccttctctccctacaagaaactgcgcaggattgacctg agcaacaaccagatctcagagatagctcctgatgccttccagggcctgcgctctctcaac tcccttgtgctgtatggaaataagatcaccgacctgccgaagggtgtgtttgacggcctc tactctttgcaactgctgctgctgaatgccaataagattcattgcgttcgtgccaatgcc ttccaggatctgcaaaatctctccctgctatcgctgtatgataacaagatccaaactctt gccaagggcaccttcacttcacttcgagctattcaaacccttcacctggcacagaaccca tttatttgtgactgcaatctgaagtggcttgcagactacctccgctccaacccgatcgag accagcggcgcccgctgtgccagtccacgccgcctcgcaaacaaacgaatcggacaaatt aagagcaagaagttccgctgctccgccaaagagcagtacgtcatcccaggtacagaagac acccatttgaataatgtctgcaacactgatcctgtgtgtccacccaagtgtcgctgtgag tccaacgtagtggactgctccaacctgaaactcaccaagatccctgagcacatccctgca tccacagctgaactccgccttaacaataatgaactaacaactcttgaggctaccggtgtg tttaagaacctttcccaactcaagaaaattaacctgagtaacaataagatcacagagatt gaggatggagcttttgaaggtgcatcgtccgtctttgagcttcacctcacagccaatcat attgactcagttcgaagcgggatgttccgaggcctcgagggacttcgcatgctgatgttg aggaacaacaaaatcagttgtgttcacaacgacagtttcacggggcttcacaacgtccgt ttgctgtctctatacgacaaccatctgaccaccattactcctggggcctttgacacgctg cagactctctccactctaaacctcttggccaactccttcaactgcgactgtcggttggcg tggcttggtgattggctgaggagcagaaagattgtgacaggtaaccctcgctgccagcgc ccggccttcttaaaggagatccccctccaggatgtagctctgccagattttcgctgtgag gaaggccaagaggagtcaagctgtgttcctcgaccccagtgtcccagcgagtgttcatgc ctagagacggtggtgcgctgcagtaacaagcatctccacacactacccaaaggcatcccc aggaatgtgactgaactgtatcttgatggcaaccagttcagtgttgttcctaaggagctg gcttccttcaaatacctacagctggttgacctcagcaacaacaaaatcaactcgctgagc aactcatcctttgctaacatgagtcaactgaccactctaatccttagctacaactctctg cgctgtatacccaaaatggctttcggtggactgcactcactgagactgctgtctcttcat ggcaatgaaatctcagagcttccagatggcatattcaacgatgtgacctccctctcccat ttggcaattggtgccaaccctctgcactgtgactgccacctgcgctggctctctgactgg gtgaagaccggatacaaagaacccgggatcgctcggtgtgccggcccacaggggatggaa agtaaattacttctcaccacgccggctaaaaaatttgaatgcacaggtgacgtagacaac acggtgctggccaagtgtaatccatgcctgtccaatccctgcctgaatcatggcatctgt cacaatgatccaatggagatatacaggtgcaactgtcctcctggattcaagggcaagaac tgtgaaacagctctgaacggctgtgtgagtagcccatgtgccaacgggggaacctgccaa gtgactgacgaggatgaggcagagtaccgctgctcctgtctgctgggcttcgagggcccg acttgccaaatcaatgttgacgactgtgaagacaacgactgtgagagtggagcaacctgc attgacggaatcaacaactacacttgtttttgtcccccttactacacaggggagatgtgt gaagaaatggaagatgtgtgtgctccaggacgaagcccctgtcaacatcagtctacctgc ctcatcagcacctctgggcccaagtgtgtgtgttctcctggttatgttggcgatgactgc agtgtaaactacgatgactgcagagagcatcgctgtcagaacggagctcagtgtgtggat gagttgaatggatattcgtgcatctgcccgaacggatatagcggtcagttgtgtgaagtt cccccatctcccctgtctttgtgtgagctggcagactgccagaacaatgccccctgtgtg gagcgaggtggccgcgctctctgccaatgtcctccagagtttggaggtccacgctgtgaa aaactcgtcagcgtcaacttcgttgacagagattcttatttactactctctgacctgaag aattggccacaagctaacatcaccctacaggtttctacagctgaggacaatggtatcctg ctgtacaatggtgacaatgatcatattgcagtggagctcttccaaggccacgtaaaagtg agctatgatcccggtagccagccaggacacgccatatacagtaccgagactatcaatgat ggtcagttccacacagtggagctggtgaccttcgaccagatggtgaacctgtccattgat gggggtctccctaccacaatggacagctttggggcagtgcggcccctcaacggagaggca ccactatacgtggggggtaggggccctctccagaacacacctccctcctctgcaggcatg cctgtagatgtccactctggaacttttcgtctctggcagatccagaacggttccagcttc cacggctgcatccagaacctctacatcaacaacgagctccaggacttcaccaagactcaa atgaagcccggcgtggtgccgggctgtgagccctgcaagaagctctactgtgtccatggc atctgccagcctgatgggttgcagggacctgtgtgtcattgccagccaggttggagtggg gcgcattgtgatcagccagctctcaacccctgccagggcagcaaatgcgtccatggaaag tgcattcctctggacctgcagtcatatcgctgtgagtgtgaagagggctaccgaggcgcg ctgtgcaaccagcaaggagagctgttcaatccctgccgccgcctcacctgcaaacatggt cgctgccagatctctgacagcggagacgcgtattgccactgcgaaagtggctacacagga gaactctgtgatgcagagtctgagtgtcgaggagagccggtgcgagacttctaccaggtg cagcgaggctacgccatctgtcaaacaactcgcatggtgtcctgggtggagtgcaccgga gcttgtgacacggggagctgctgcatcagccagaggatgaaacgccgaaaatacaccttc gagtgcagcgacggaacgtccttcaccgaggaggtggaaaagaccatcaagtgcggctgc gtgggctgcatgtag

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