Candidatus Gromoviella agglomerans: Gromo_00297
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Entry
Gromo_00297 CDS
T07728
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gagg
Candidatus Gromoviella agglomerans
Pathway
gagg03030
DNA replication
gagg03410
Base excision repair
gagg03420
Nucleotide excision repair
gagg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gagg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Gromo_00297
03410 Base excision repair
Gromo_00297
03420 Nucleotide excision repair
Gromo_00297
03430 Mismatch repair
Gromo_00297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gagg03032
]
Gromo_00297
03400 DNA repair and recombination proteins [BR:
gagg03400
]
Gromo_00297
Enzymes [BR:
gagg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Gromo_00297
DNA replication proteins [BR:
gagg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Gromo_00297
DNA repair and recombination proteins [BR:
gagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Gromo_00297
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gromo_00297
MMR (mismatch excision repair)
DNA ligase
Gromo_00297
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Gromo_00297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
HCV_NS5a_1b
Motif
Other DBs
NCBI-ProteinID:
UFX98400
LinkDB
All DBs
Position
complement(344545..346644)
Genome browser
AA seq
699 aa
AA seq
DB search
MFDNSESISASKLKRIKQLKEKITYYDAMYYGKNVSVIPDKEYDLLKCELESLFEDITIG
RGIDADNKIRHLAPVLSLKNVYSRDQLAAFVDRIQKSCPDGNIEFVGELKVDGLTLIIKY
DQHHAISFATRGDGSCGENVKANAIYIQNIRHNLMQNCVEVNDFSKFISNTDELFFRNES
FFDSHDFKNFHDINSVFEVRGEVYLNKNDYIAINELCKGKFSTSRHAASGLLRQINASVE
DQKKLRFMAHGFFGDFYEFTKYTQVMSVLSNCGIECVPRRICSNLTEMVEFYEHIAKIRD
NLPCHIDGIVFKVNDLNLQSVIGSSGAYPRYAIAYKFDANIGVSKLINVSWQVGRTGQVT
PVANIETINLGGVNISNVTLHNYQEIVNMEMKIGDYITVERAGDVIPHIIGVRKANITES
NKHSDIRCPNLCPCCKTPLRYESPLLFCENPNCRDKKIASILHFVSRDAMNISGLGVKNV
QYLYKAGALQSFVDIFKLNRTVLSRFWKDKSIDNLLKEIDNAKNTTFDRFLYAIGIRGVG
KFTARIIANKYKSVNDFLKMFDHINQSDFVAKKEFIASNLSEIHGIGSVVANEIVAFFCK
HYFDVLALLQFLSIEDYNTETLPLDNKRIAITGKFSLGSRSYILNIISKFGGIYTTTISK
NTDILLTGDGDGSKLQKALKFGVQIMNENEFAIITKMLK
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtttgataattcagaaagtatttctgcaagtaaattaaagcgtataaagcaactgaag
gaaaaaattacatattatgatgctatgtattatggaaagaatgtttctgtgattcctgat
aaggaatatgacttgcttaaatgtgaattggagagcttgtttgaagatattaccattgga
cgtggcattgatgcagataataaaattcgtcatttagctcctgtcttatcattgaaaaat
gtctactcgagagatcagttagctgcgtttgttgatagaatacaaaaatcatgtcctgat
gggaacatagaatttgttggagaattgaaagttgatggattgactttgatcattaaatat
gatcagcatcatgctatatcttttgcgacgagaggagatggctcttgtggagaaaatgta
aaagcaaacgcgatttatattcaaaatattcgtcataacttaatgcaaaattgtgttgaa
gtgaatgattttagcaaattcattagtaatactgatgaacttttttttcgaaatgaatca
ttttttgattctcatgattttaagaattttcatgatattaactctgtgtttgaggtgcgc
ggagaggtttatctaaataaaaatgactatattgcaataaatgaattgtgtaaagggaaa
ttttcaacatcgcgacatgctgcatctggattgcttaggcaaattaatgcatctgttgaa
gatcaaaagaaattacgttttatggcacatggtttttttggtgatttttatgaatttacg
aaatacactcaggttatgtctgtgttgagtaattgtggaattgaatgtgttccaagaaga
atatgctccaatctcactgaaatggttgaattttatgagcatattgcaaaaattcgtgat
aatttaccttgtcatatcgatggaatagtatttaaagttaatgatttgaatttacagagt
gttattggctcatcgggagcatatcctcggtatgctatagcatataaatttgacgcaaac
ataggggtgtctaagttaattaatgtttcttggcaagttggaaggactggacaggtgact
cctgtagctaatatagagacaattaacttagggggggtgaatatatcaaatgttacgcta
cataattaccaagaaatcgtcaatatggaaatgaaaataggagattacatcactgttgaa
agagctggcgatgtgatacctcacattattggtgtgagaaaagcaaatattactgaaagc
aataagcattcagatataagatgtccaaatctctgtccttgttgtaaaactcccctgcgt
tacgaatctccattgcttttttgtgaaaatccaaattgtagagataagaaaattgcatcg
atacttcattttgtttcgcgagatgctatgaacataagtggactcggagtcaaaaatgtt
caatacctatacaaagctggcgctcttcaatcttttgtggatatctttaaactgaatcgt
actgtattgagcaggttttggaaagataagtcaatcgataatttgctaaaagaaattgat
aatgcgaaaaatacgacttttgatagatttctatacgcaattggtattcgtggagtcgga
aaatttactgcaagaattattgcaaacaagtataaatcggtaaatgacttcttaaaaatg
tttgatcatataaaccaatctgattttgtagctaaaaaagaattcatagcatcaaactta
agtgaaattcatggaatcggatctgttgtggcaaatgaaattgttgcttttttttgcaaa
cactattttgatgtgttagctctattgcaatttctttctattgaagattacaatacagaa
actctacctttagataacaaaagaattgcaataacaggaaagttttcgcttggatctaga
tcttatattttgaatattatatcaaaatttggtgggatttatacgactactatctccaag
aatacagatattttgcttacaggtgatggagatggcagtaaattgcaaaaagcattgaaa
tttggtgtccagatcatgaatgaaaatgaatttgcaattattacaaaaatgctaaagtga
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