KEGG   Glycocaulis alkaliphilus: X907_0676
Entry
X907_0676         CDS       T05786                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
gak  Glycocaulis alkaliphilus
Pathway
gak03030  DNA replication
gak03410  Base excision repair
gak03420  Nucleotide excision repair
gak03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    X907_0676
   03410 Base excision repair
    X907_0676
   03420 Nucleotide excision repair
    X907_0676
   03430 Mismatch repair
    X907_0676
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gak03032]
    X907_0676
   03400 DNA repair and recombination proteins [BR:gak03400]
    X907_0676
Enzymes [BR:gak01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     X907_0676
DNA replication proteins [BR:gak03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     X907_0676
DNA repair and recombination proteins [BR:gak03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     X907_0676
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     X907_0676
   MMR (mismatch excision repair)
    DNA ligase
     X907_0676
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      X907_0676
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 Nlig-Ia PTCB-BRCT
Other DBs
NCBI-ProteinID: AZU03221
UniProt: A0A3T0E750
LinkDB
Position
705782..707917
AA seq 711 aa
MSSEIENLSPEAAAAEHARLAEEIAAHDRAYYAEDAPVITDAEYDGLRARLEALEAAFPE
LAHAESPTQTIGAKPSGKFAEVRHAVPMLSLGNAFDEDDVAAFEARIRRFLNLKDDETLA
FTAEPKIDGLSASLRYEKGVLRSGATRGDGQTGENVTENLKTLNEIPKTLTGDVPDVLEV
RGEVYLSHADFAALNAAQEAAGKPAYKNPRNAAAGSLRQIDPEITATRPLRFFAYAWGEV
SEPLADTQSGAVERLKALGFTTNDDMKRCEGVDALLAHYRDLEARRAELGYDIDGVVYKV
DRLDWQARLGFVARAPRWAIAHKFSPEKAVTKLNNIEIQVGRTGALTPVAKLEPVTVGGV
VVSNATLHNEDYIRGVGKDGEPIRGGTDIRIGDTVIVQRAGDVIPQIVDVLKDRRDGSEQ
AFVFPKVCPCPLQTPAEREVNPRTGEVNAVTRCTGEFACPYQRKEHLKHFVARKAFDIEG
LGEKQVEAFYEEGIVKEPADIFTLAARNGDGQITPPIAEREGWGEKSAANLFDSIEARRS
IGLARFINALGVRHVGEETSRLLARTYGSWDAFEAAAARAGEEGEAREAMLGVDGLGDTA
VDAIGRFFAEEHNRAALARLLDQVKVEDAEAVATDSPVAGKTVVFTGALERFTRDEAKAR
AQSLGAKVAGSVSAKTDYLIAGPGAGSKLKKATELGVTTLTEDEWLVLIGG
NT seq 2136 nt   +upstreamnt  +downstreamnt
gtgagctccgaaatcgaaaacctgtccccggaggccgccgctgccgagcatgcgcgcctc
gccgaagagatcgcggcccatgaccgcgcctattatgcggaagatgcgccggtcattact
gacgccgaatatgatggcttgcgtgcccggctggaggcactggaagcagctttcccggag
ctggcccacgcggaaagtcccacgcagaccatcggcgccaagccatcgggcaaatttgcc
gaggtgcgccatgccgtgcccatgctgtcgctcggcaatgcctttgacgaagacgatgtg
gccgcgttcgaggcgcgcatacgccgctttctgaatttgaaggacgacgaaacgctcgcc
ttcactgccgagccgaagattgacggtctgtcggcatccttgcgttatgagaagggtgtg
ctccggtcgggcgcgacgcgcggagacggccagacgggcgagaacgtcaccgaaaacctc
aagacgctgaatgagatacccaaaacgctcaccggcgatgtgccggacgtgctggaagtg
cgcggcgaggtttatttgagccatgcagacttcgcggcgctgaacgcggctcaggaggcg
gctggcaagccggcctacaagaacccgcgcaacgccgccgccggttcgctgcgtcagatc
gatccggagattaccgccacgcgtcctttgcgctttttcgcctatgcctggggcgaggtg
tctgaacccttggccgacacccagtccggcgcggttgagcgcctgaaggcgctgggcttc
accacgaatgacgacatgaagcggtgcgagggcgtggacgcgctgctggcccattatcgc
gatctggaagcgcgccgggcggagctgggctacgatatagatggcgtcgtctacaaggtg
gaccggctggactggcaggcgcgcctgggctttgtcgcgcgcgccccgcgctgggccatc
gcgcataaattctcgcccgaaaaggcggtgacgaagctcaataatatcgagatccaggtg
ggccgtaccggcgcgctcacccctgtggccaagctcgaacccgtcaccgtgggtggcgtc
gtggtctccaacgccacgctgcacaatgaggattatattaggggcgtcggcaaggacggc
gagcctatccgtggcggaaccgacatccgcatcggcgacaccgtgatcgtccagcgtgcg
ggcgatgtgatcccgcagattgtcgacgtgctcaaagaccggcgcgatggcagcgagcag
gcctttgtgttcccgaaggtctgcccctgtccgctgcagacgcccgccgagcgcgaggtg
aatccgcgcaccggcgaggtcaatgccgtcacccgctgcactggcgagtttgcctgcccc
tatcagcgcaaggagcacctgaaacacttcgtcgcccgcaaggcgttcgatattgagggg
ctgggcgagaagcaggtcgaggccttctatgaggaaggcattgtgaaggagcctgccgac
attttcacgctcgccgcgcgcaatggtgatggccagataacgccgccgattgccgagcgt
gagggctggggcgagaagtccgccgcgaacctgtttgactccatcgaggcgcgccgctcc
atcggtcttgcccgcttcatcaatgcgctgggcgtgcgccatgtgggcgaggaaacctcg
cggcttctggcgcgcacttatggcagctgggatgcgttcgaggccgctgccgcgcgcgct
ggcgaagagggcgaggcgcgcgaggccatgctgggcgttgacgggctgggcgatacggcg
gtcgatgccattggccgcttcttcgccgaggagcataaccgcgctgcgcttgcgcgcctg
ctcgaccaggtaaaagtggaagacgccgaggcggtcgcgaccgacagcccggtagccggc
aagacggttgtcttcaccggcgcgctggagcgcttcacccgcgatgaggccaaggcccgc
gcgcagagccttggcgcgaaggtggccgggtcagtatcggccaagaccgattatctcatc
gccggacccggcgcgggttcaaagctgaaaaaggccaccgagctcggcgtgacaaccctg
accgaagatgagtggctggtactgattggcgggtag

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