Grus americana (Whooping crane): 129202583
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Entry
129202583 CDS
T11359
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
game Grus americana (Whooping crane)
Brite
KEGG Orthology (KO) [BR:
game00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
game03036
]
129202583 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
game03400
]
129202583 (SMCHD1)
Chromosome and associated proteins [BR:
game03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
129202583 (SMCHD1)
DNA repair and recombination proteins [BR:
game03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
129202583 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
Big_1
HATPase_c
Motif
Other DBs
NCBI-GeneID:
129202583
NCBI-ProteinID:
XP_054671586
LinkDB
All DBs
Position
2:53737937..53822158
Genome browser
AA seq
2031 aa
AA seq
DB search
MAAAAGGSRGARRPVLLTPRGNGDRTVFLFDRRREQADPDEKVLSYGKDNYRGFRRAVCQ
AFGIATDENFVITTTNRKELTEDNFSELVQDGVTLYLLQSVDQMLLSATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSIQIKLLFDESQGKPAVAV
IDNGRGMTSKQLNNWAVYRLSKFTRPGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSTHITSDD
ERFLHNLILEERDKESFTAVVITGVQPGHTQYLKNYFHLWTRQLAHIYHYYIHGPKGNET
NAVTKDVSPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEGEG
IVEGIIRYHPFLYDKETYPDDPCFPSKLNDDDDDEDCFIVEKGARGKRPIFECFWNGRLI
PYTTVEDFDWCAPPKKRGLAPVECFNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTL
FTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTGFKGVTTRTDLPSKRMQSPWTTYA
AIEWDGKTYKTGQLVKTVKTLPIFYGSIEKFFLYGDHDGDIFATGGEVQIALKPQALYAE
MKTIPISKLDRTVSDKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRI
EILNKKGEPMQKLPGTSHGGSKKLLVELKVILHSPTGNKEIISHISQHGGKWPYWFKKME
NLQKLGNYTLKLQVVLNESNADTYAGRPLPSKIFKFTIIEGKPEKFSVGLLELPFRVGVP
FNIPLELQDEFGHATQLTTDIKPILEASGLTLQYEEITAGTKCVIKGVTAKGCVNSCQGK
NFNLKVTLPGLKEDTQIFKIRLQPGPPHQLKVKPDSEILKIENGTAFPFQVEVLDESGNI
TAQPKLIVHCKFLGASNLPVYSVDCSNAGTNILTGPVIHVQNIKKDQMLKARIEILSCKD
VPPVEKMIKLLPSSHVARLQVLSMDGQKALQIKHQDEINWVAGNVLHNLIFQMYDEGERE
IHITPAVAEKIKVNWTPRINREQLIQGLLPDVKVPTSVKDVRYCLITYLDDHVSLESAFT
VRPLPDEPKHIKCKLKGPNTLQLGEELQSEIDVMITDQYGNQVQTVTSACVNSLGVSGPG
LDKSSLKITWQESTLTMRVKGIRFKPSLLGSKELCFAWREFSDFLRVNVTAGSPAKLQFV
DWPELEKPVAVINGRELQKPLIVQLCDQWGNPTPEPNIKISLTKSNNLKIVPSNQQHKTD
ENGRANLGVISIHAPRGEHTLQLKASYNKTTLDCPIITFSVMPDPEKPVRLNVKYDKNAS
FPAGGTFPDFMVSVLSEDDNIIKNINPARISMKMWEAQSSGTRIPIDVTTFSCSKVKDDK
EDGFFYFRDKMVPERVGTYSIQFTFAMDKTNMLSSDQIIVEVVPNDPVRLLPDSLPATPA
VSNVRTLTSRTLVKDLYLHVMDEYNNHTGIDLVGKIRAKIKSPNEDDTEIPQFQEKVSTI
EFPFDRGSAEINLVLAENSPGRDSTEYVLVFEPDLPALKKPLEPYRLSFMFYNDFKKQQQ
MATLTRERDQLSQSISVYRNWFDTTNQLVTEMKCQVKEAETRETQLKNELKKHQIELPQT
NTLQYVDSLTKQKMLDQEGVLKQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAAKVIS
WHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKIFFR
PIGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTR
EGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTLSGQIDLLQQYRAAVVKLDNV
NKDLDLHLQSLNTPEMQKKKQELAEQEKSLKLIEQKLGMTPSDKVTEPLLQPVMLDMSDT
PIPPKRMRRETVQKLYSSEEWISSPTKKQQQQQLLQVSPSELNGTPRKRKA
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcagcgggaggcagccgcggagctcgcaggccggtgctgctgacgcctcgc
ggcaacggggaccgtaccgtgtttctcttcgaccggcgccgggagcaggcggatccggac
gagaaagtgctcagctacggcaaggacaactaccgcggcttccgccgcgccgtctgccag
gcatttggcatagctactgatgaaaactttgttatcaccacaacaaacaggaaggaactt
acagaagacaacttcagcgaacttgttcaagatggagttactttatatctgctacaatca
gttgatcaaatgctgctttcggccaccaaggagcgaattgacttcctgccccactatgat
acacttgtcaaaagtgggatgtacgagtactatgccagtgaagggcaaaatcctttgcca
tttgcccttgctgaactgattgacaattctctgtcagctacatcccgaaatactggtatt
cggagcatacaaataaaattgttatttgatgagtcccaaggaaaaccagctgttgccgtg
atcgataatggaagaggaatgacctctaagcagcttaacaactgggctgtatatagattg
tcaaagtttacaaggccaggtgacttcgagagtgatcattcaggatatgtacgacctttg
ccagtgcctcgtagtttaaatagtgatatctcatattttggcgttggaggcaaacaagca
gtgttcttcgttggacagtctgccagaatgataagcaaacctgcagattctcaggatgtt
catgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaggcaata
tatagcggatacattcgaaacagaaagccatctgactctactcacatcacaagtgatgat
gaaagatttcttcataatctaatactagaagaaagggataaagagagtttcacagcagtt
gtcattacaggtgtacaaccaggtcatacgcagtacttgaaaaactactttcatctttgg
acaaggcaactggcacatatctatcactattatatccatggaccaaaaggaaacgaaact
aatgctgtaacaaaagacgtaagccctttcaacaacattgacattcaaatttcaatgttt
gaaaaaggaaaagtaccgaagattgtcaatcttagggagatcaaagatgacatgcagaca
ttgtatataaatactgcagcagatagttttgagtttaaggcacatgttgaaggagaaggt
attgtggaaggcatcatccgatatcatcccttcctgtatgataaagaaacataccctgat
gatccatgtttcccatcaaaattaaacgatgacgatgacgatgaagactgctttatagta
gaaaagggtgccagaggaaaaaggcctatttttgaatgtttttggaatggaagattgata
ccatacacaactgtggaagactttgattggtgtgctcctccaaagaagagaggattggca
ccagttgaatgcttcaacagaatttctggtgcattatttaccaatgacaagttccaggtc
agcacaaacaaactcactttcatggatctggagctgaagctaaaagataagaatactctg
ttcactagaatcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctttg
tggctcaaagactgtcatgaaaaatacgataaacagataaaattcacaggttttaaagga
gtaactacacgtactgatttaccatccaaaagaatgcagagcccttggacaacatatgct
gcaatagagtgggatgggaaaacatacaaaactggacagctggtgaaaactgttaagact
cttccaatattctatggaagtattgagaaattttttttgtatggagaccatgatggagat
atatttgccactggaggagaggttcaaattgccttgaaacctcaggcattgtatgctgaa
atgaaaactattccaatctcaaaacttgacagaacagtgtctgacaaagctgttaaaaaa
tacatagaggatgaaatggcaagacttcctgacaaattatcagtaacatggcctgaagga
gatgagttattaccaaatgaaacaagatttgctggtacaccaataggagcattaagaata
gaaattttgaataaaaaaggagaaccaatgcaaaaacttccaggtacaagccatggaggt
tcaaagaaacttcttgttgaactcaaggttattttacattcacctactgggaataaagaa
ataatttcccatatcagtcagcacggaggcaaatggccatactggtttaaaaaaatggaa
aatcttcagaaacttgggaactacaccttgaaactgcaagtagtcttgaatgaaagtaat
gcagacacttatgcaggaaggcctctaccatctaaaatatttaaatttactattatagag
ggcaaaccagagaaattttcagtgggtcttttggagcttccttttcgagttggagtacct
tttaatattcctttggaattgcaggatgaatttggtcatgcaacacagttgacaactgac
attaaaccaattcttgaagctagtggattgacattgcagtatgaagaaataactgcagga
acaaagtgtgtcattaagggtgtcactgctaaaggctgtgtaaacagttgccagggcaag
aacttcaatctgaaggttactcttcctggtttgaaagaagacacacaaatctttaaaata
agattgcagcctggccctcctcaccaattgaaagtaaaaccagattctgaaattctaaag
attgaaaatgggacagctttcccctttcaggttgaagtactggatgaatcaggaaatata
acagcacagccaaagttgatagttcattgcaagtttttaggtgcttcaaaccttccagtg
tattctgtggactgcagtaatgcaggaacaaacattttaacggggccggttatacacgta
cagaatataaagaaagaccagatgctgaaagcaaggattgaaatacttagttgcaaagat
gtgccaccagtggaaaagatgattaaacttcttcctagcagtcatgttgcaagactacag
gtcttaagtatggacggacagaaagctcttcaaattaaacatcaggatgaaattaattgg
gttgctggcaatgtcttgcacaaccttatatttcagatgtatgatgaaggagaaagggag
atacacataactccagctgtggcagaaaaaatcaaggttaactggacacctagaattaac
agagaacagttgattcagggattattacctgatgtaaaagtaccaacatcagtaaaagat
gtacgttactgtctaattacttatcttgatgaccacgtgtctttggagagtgcattcaca
gtcagaccacttcctgatgaacccaaacacattaagtgtaaattaaaaggaccaaacaca
ctgcagctgggtgaagaactacaaagtgaaattgatgtaatgattacagatcagtatgga
aatcaggttcagacagtgacatctgcatgtgtaaattccctaggagtttctgggcctgga
cttgataaatcaagtttgaaaataacttggcaggaaagtactctaacaatgagagtaaaa
ggtattcggtttaaaccttctttacttggaagcaaagaattgtgctttgcatggcgtgaa
ttttctgactttctcagagtaaatgtaactgcaggatcccctgctaaattgcagtttgtg
gattggccagagttagaaaagcctgttgcagtgattaatggtagagaattgcagaagccc
cttattgttcagctgtgtgatcagtggggaaatccaactcctgaacctaacatcaaaatc
agccttacaaagagtaacaacttaaagattgttccttcaaaccagcaacataaaacagat
gaaaatggtagggctaacctgggagttattagtattcatgcacctaggggagagcacact
ttacagcttaaagcctcatacaacaagaccacattagattgtcctataatcacattcagt
gtcatgcctgatcctgagaaacctgtccgcttgaatgttaaatatgacaaaaatgcttct
tttccagcaggaggtaccttccctgattttatggttagtgttctttctgaagatgacaac
atcattaaaaatattaatccagcacggatttctatgaaaatgtgggaagcacagagcagc
ggaactaggataccaattgatgttacaacatttagctgtagtaaagtgaaagatgacaag
gaagatggcttcttttacttcagggataaaatggttccagagagagtgggcacttacagt
atccagtttacctttgcaatggataagacaaatatgctcagcagtgaccagattatagtt
gaagttgtacctaatgaccctgtacgcttgttacctgattctttaccagctactccagca
gtttccaatgttcgaacccttactagccgtacactggtgaaggatttatacctccatgta
atggatgaatacaacaaccatactggaattgatctagttggcaaaataagagccaaaatt
aagagccctaatgaagatgatacagagatcccgcagtttcaggagaaagtcagtacaatt
gagtttccatttgacagaggatcagctgaaattaatctagtgctggctgaaaacagtcct
ggaagagatagcactgaatatgttcttgtatttgagccagatctgccagctttgaaaaaa
cctttggaaccataccgtctgtcatttatgttttacaatgatttcaagaagcagcaacag
atggcaacacttacaagggagagagaccaattatctcagtccataagtgtttacagaaat
tggtttgatactactaatcagcttgtaactgaaatgaaatgtcaagttaaagaagctgaa
acaagagaaactcaactgaagaatgaactgaaaaaacaccaaatagaattaccacagaca
aacacacttcagtatgtggattctcttacaaaacaaaagatgttggatcaagaaggagta
ctgaaacagccacggcgaacttgtacgctcccaaactatccaaaaggcaaccaggatatt
ttaggcaagattgcacatttagcacaaattgaggataacgaagcagcaaaagttatctct
tggcatttggcaagcgatatggactgtgtagtcacactgactactgaagctgctcgttct
attttcgatgaaactcaaggtcgacagcaagtattaccccttgattctatttacaagaag
acactccctgattggaacaggcctttacctcacttaagaaatggaaaaatcttcttcaga
cctattggaaatcctgtatttgccagagatttgttaacatttccagataatgtagagcat
tgtcaaacagtgtttggtatgctcttgggtgacactatcattatagataacttggatgct
gccaaccattacagaaaagaggttgtaaaaattacacattgccctactttgctgactagg
gaaggagacaggattcgcagcaatggaaaatttggaggccttcagaataaagctcctcca
atggacaaactcagaggaatggtatttggagcacccatgccaaaactttactctacttta
tctggacagatagatcttcttcagcaataccgtgcagctgtggtgaaacttgataatgtg
aataaggacctcgatttacatttgcagtcacttaacactccagaaatgcaaaagaaaaaa
caggagcttgctgaacaagagaagagcctgaagctaatagaacagaaattgggtatgact
ccatcagataaagtcactgaaccattacttcagcctgtaatgttagatatgtctgacacc
cccatccctcccaaaagaatgcgaagagaaacagtacagaaattgtatagctcggaagaa
tggatctcctctcccacaaagaagcagcagcaacagcaactgctgcaagtatccccttca
gaacttaatggaactccacgaaagagaaaggcatag
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integrated database retrieval system
