Grus americana (Whooping crane): 129213552
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Entry
129213552 CDS
T11359
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
game Grus americana (Whooping crane)
Pathway
game03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
game00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
129213552 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
game03000
]
129213552 (KDM2B)
04121 Ubiquitin system [BR:
game04121
]
129213552 (KDM2B)
03036 Chromosome and associated proteins [BR:
game03036
]
129213552 (KDM2B)
Enzymes [BR:
game01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
129213552 (KDM2B)
Transcription factors [BR:
game03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
129213552 (KDM2B)
Ubiquitin system [BR:
game04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
129213552 (KDM2B)
Chromosome and associated proteins [BR:
game03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
129213552 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
129213552 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129213552
NCBI-ProteinID:
XP_054699775
LinkDB
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Position
16:complement(14563329..14689144)
Genome browser
AA seq
1289 aa
AA seq
DB search
MKLSKKMEAEKDSGRRLRSIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QKGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMIIDAKRKRSTDSYSSDSWLDMDEESCDAHIREEKDDSLDKNSKSMVDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKTQVDSILRRKSDEVHLWRKRKSEK
PQEPTMRKRRRSWKASDDRTAMIKPLRRLKQEPEDDLPEAPPRSKDSDQSRSSSPTAGPS
TEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESEN
EEPKRALNNSERLHRFSKGLNGTPRELRHQLIPSLRSTPRGITRPPPSLSPPKCIQMERH
VIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRL
WTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSW
IAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSG
KEQFCGSCHIRPDLSSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSY
CNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVT
KEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctcaaaaaaaatggaggcagagaaagactctggaagaagattgcgatctatt
ggcagaaggcgatacgatgagaacgaggacctttcggacgtggaggaaattgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaatgtatcacggggatttcgtgcat
gccatggacgggaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
cttatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattagtgggaagccgacggatagtggacgtgatggatgtgaacacg
cagaaaggtgttgaaatgagcatgtctcaatttgtgagatactatgaaacaccagaggcc
cagcgtgaaaaactctacaatgtcatcagcctggagttcagtcacacgaagctggagaac
attgtcaagcgccctaatgtggtggacttagtcgactgggtggataatatgtggccacag
catttgaaggagagacagacggatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtattgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattccg
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaaacaaagtgat
atctttctaggagacagagtggaacgatgccaaagaattgagctgaaacaaggctataca
ttcttcattccttcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgataattgatgcaaaaagaaaacgcagcacagacagctattcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatatccgggaggagaaggatgac
agcttggacaagaactccaaatccatggtggatggctcctcctcacccaacagcacacac
tcagaagggaaggagggtgcaggaagaaaacaaaaagccacagtaatgagatacctaaaa
agaactttgtctaatgagtcagatgacagcgtaaaatcaacaacccccacggactatccc
aaaacaccaacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtagaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcatcgaagatccgcaggctctcctagaggacatgaagaacata
ctgaaggaacatgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggttagc
tggcccaagaagaccacaaagaacagggcggtcggacggcccaaagggaaactgggcacc
gcttctgcggtgaagctcgcagctaatcgaacaaccgctggagcacgtcggaggaggacg
cgatgccgcaagtgcgaagcgtgtctgcggacagagtgcggcgagtgtcacttctgcaaa
gacatgaagaaatttgggggacctggcaggatgaaacagtcctgcatcatgaggcagtgt
atcgcgccggtgttgcctcatactgctgtgtgtctggtgtgcggagaggctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaagcg
tacaagcaaaagcgcggaccaggattcaaatacgcatcaaatctcccaggctcattgctg
aaggaacagaaaatgaacagagacaacaaggaagtaacagatgctgcaaaacggaaaggg
gattgtgaagaaactcccaggcggaaatcggaggaacattccaaaaagactcaagttgac
tcaatactgaggagaaagtcagacgaagtgcatctgtggaggaaaaggaaatctgagaaa
ccccaggaacccactatgagaaagcggcggcgatcgtggaaggcttcagatgaccgcact
gccatgatcaagcccctgcggcgcctgaagcaggagccagaggatgacctgccagaagca
cctcccaggtccaaggatagcgaccagtcacggtccagctcgcccactgcaggtcccagc
acggagggtgctgagcccagggacaagaagaagttcaagatgaggaggaaaaggcggctt
cccaataaggaactgagcaaggagctcagtaaggagctcaaccaggagatccaaaaaacc
gagaacagccttgccaatgagaatcaccaacccatcaaatctgaacccgagagcgagaat
gaggaacctaagcgtgctttgaacaacagcgagagactccataggttcagcaaagggtta
aacgggactccccgggaactgaggcaccagctcatccccagcctgcgaagcacacctcgg
ggaataacccggccaccgccttcgctctctcctcccaaatgcattcagatggaacggcac
gttatccggccgcctcccatcagcccccctccggactcgctccccctggatgacggggca
gcccacgtgatgcagcgggaagtctggatggctgtctttagctacctcagtcatagagac
ttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagatta
tggaccaaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggcatt
attaggagacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcagctg
agttggcttatcaacagactgccaggtcttcgagacctgctgttgtcagggtgctcgtgg
atagcagtgtcagcactttgtagttccagttgtcctttactacgaactctggacgtgcag
tgggcagaaggcctgaaagacgcacaaatgagagacctcttgtcaccgcccacagataac
cggccaggctgcaacgggtgtactttagagagtatggaaacactttcttccagttcaggg
aaggagcagttctgtgggtcatgccacattcgcccggatctcagctcaggtcagatcgac
aaccggagtaaactacggaacatcgttgagctgcgtttggctggcctggatatcacagat
gcttctttgcggctgatcataaggcacatgcctctgctctccaaactcaatcttagttac
tgtaatcacgtgacagatcagtctattaacctgctgaccgcagttggaaccaccacgcgg
gattcgttaacagaaattaatttatcagactgcaataaggttactgaccagtgcctgtct
tacttcaaacgttgtggaaacatctgccagatcgacctgaggtactgcaagcaagtgaca
aaagaaggctgtgagcagttcatagcagagatgtcagtaagtgttcagtttgggcaagtg
gaagaaaaacttctgcaaaaactgagttag
DBGET
integrated database retrieval system
