Gallibacterium anatis: UMN179_02173
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Entry
UMN179_02173 CDS
T01482
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gan
Gallibacterium anatis
Pathway
gan03030
DNA replication
gan03410
Base excision repair
gan03420
Nucleotide excision repair
gan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UMN179_02173
03410 Base excision repair
UMN179_02173
03420 Nucleotide excision repair
UMN179_02173
03430 Mismatch repair
UMN179_02173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gan03032
]
UMN179_02173
03400 DNA repair and recombination proteins [BR:
gan03400
]
UMN179_02173
Enzymes [BR:
gan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UMN179_02173
DNA replication proteins [BR:
gan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UMN179_02173
DNA repair and recombination proteins [BR:
gan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UMN179_02173
NER (nucleotide excision repair)
GGR (global genome repair) factors
UMN179_02173
MMR (mismatch excision repair)
DNA ligase
UMN179_02173
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UMN179_02173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
DNA_pol_lambd_f
Acid_PPase
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AEC18186
UniProt:
F4HFA3
LinkDB
All DBs
Position
complement(2332867..2334882)
Genome browser
AA seq
671 aa
AA seq
DB search
MDDLQQHIEQLRNDLRYHEYQYHVLDNPVIPDAEYDRMMNQLKRLEAEHPELITDDSPTQ
RVGAKPANGFQQIRHELPMLSLDNAFSDEEFFAFIRRIEDRLGVLPDPFTFCCEPKLDGL
AVSILYVNGKLTQAATRGDGVTGEDITANIRTIRNIPLQLRTATPPARLEVRGEVFMPHD
GFERLNNHALEHGEKTFANPRNAAAGSLRQLDPQVTYHRPLMLNAYGIGIAEGVELPNTH
YDRLQWLKSIGIPVNKEIRLCNGTTEVLDFYRSIAEKRSSLGYDIDGTVLKVNSIPLQEQ
LGFISRAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVYVAGVTVSNATLH
NGDEIARLDIAIGDTVIIRRAGDVIPQIIGVVHDRRPPDAKPIIFPTRCPVCDSAIVRID
GEAVARCTGGLVCEAQRKEGLKHFVSRKAMDIDGVGDKLIEQLVDREYLHTPVDLFTLSK
ETLMGLERMGEKSAEKALASIEKAKKTTLARFLFALGIREVGEATARNLANHFHTLENIK
NATFEQLQQVQDIGEVVANRIILFWQEQHNRNVVEKLIEQGVTWDDVNATEIADNPLKEK
TVVLTGTLTQMTRDQAKALLLQLGCKVAGSVSSKTDFVIAGDNAGSKLQKAESLGVKVLT
EQQFLDLIPQD
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggacgatcttcaacaacacattgaacaattaagaaatgatcttcgttaccacgaatat
caatatcacgttctcgacaatccggtgattccggatgcggaatatgatcgaatgatgaac
caattaaaacgtctggaagcggaacatccggaactgatcacagacgactcaccgacccaa
cgggtcggggcaaaaccggcgaacggctttcaacaaattcgccacgaattgccgatgtta
tcgcttgataacgctttctcggatgaagagttcttcgcctttattcgccgtattgaagat
cgacttggtgttttgcctgatccgttcacattctgctgtgaaccaaaattagacggcttg
gcagtcagcattctttatgtcaacggcaaattaacacaagcggcaacacgtggcgacggt
gttaccggtgaagatattaccgccaacatccgtactattcgcaatattccgctacaatta
cgcactgctacaccgccggcacgtttagaggtgcgcggtgaagtctttatgccgcacgac
ggttttgaacgtttaaacaatcacgcattggaacacggcgaaaaaacctttgccaatcca
cgcaatgccgccgccggttccttgcgtcagctcgatccgcaagttacttatcatcgtccg
ttaatgttgaacgcttacggtatcggcattgccgaaggtgtggaattaccgaacacccat
tatgatcgtctgcaatggctgaaaagcatcggcattccggtgaataaagagatccgcctt
tgtaacggcacgacagaagtgttggacttttatcgttccatcgccgaaaaacgcagcagc
ctcggttatgacattgacggcacagtgttaaaagtaaacagcattccattgcaggaacag
ctcggttttatttcccgtgcaccacgttgggcgattgcctataaattcccggcacaggaa
gaattaaccattctcaatgatgttgaatttcaggtgggacgcaccggcgcaatcacaccg
gtggcgaaacttgaaccggtttatgttgccggcgtaaccgtcagcaatgcaacactgcac
aatggtgatgaaattgcccgtttggatattgctatcggggacaccgtgattatccgccgt
gccggtgatgtgattccacaaattatcggcgtggttcacgatcgccggccgccggatgcc
aaaccgatcattttcccgactcgctgtccggtttgtgattcagcaatcgtgcgtattgac
ggtgaagcggtcgctcgttgtaccggtggattggtatgtgaagcacaacggaaagagggc
ttaaaacatttcgtttctcgtaaagcgatggatattgacggtgtcggtgataaattaatc
gaacagttggtcgatcgcgaatatctgcatacgccggttgatctcttcaccctaagtaaa
gaaaccttgatggggttggagcgtatgggcgaaaaatcagcagagaaggcacttgccagc
atcgaaaaagcgaaaaagaccacccttgcccgtttcctgtttgcgttgggtattcgtgaa
gtcggtgaggcaaccgcacgcaatttggcgaaccattttcacaccttggaaaatatcaaa
aacgccacctttgaacagttgcaacaggtgcaggacatcggcgaagtggtcgccaaccgc
attattctgttctggcaagagcaacataaccgcaacgttgtcgaaaaattgattgaacag
ggcgtaacttgggatgatgttaatgccacagaaattgccgacaatccgcttaaagaaaaa
accgtcgtgctgaccggcacattaacgcaaatgacgcgcgatcaggcgaaagcgttgtta
ttgcaattaggctgtaaagttgccggcagtgtttccagcaaaaccgattttgttattgcc
ggtgataacgccggttcaaaattacagaaagcggaaagtttgggcgtaaaagtcttaacc
gaacagcaatttttagacttaattccgcaagattaa
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integrated database retrieval system
