Glutamicibacter halophytocola: AOZ07_04625
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Entry
AOZ07_04625 CDS
T04229
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gar
Glutamicibacter halophytocola
Pathway
gar03030
DNA replication
gar03410
Base excision repair
gar03420
Nucleotide excision repair
gar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOZ07_04625
03410 Base excision repair
AOZ07_04625
03420 Nucleotide excision repair
AOZ07_04625
03430 Mismatch repair
AOZ07_04625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gar03032
]
AOZ07_04625
03400 DNA repair and recombination proteins [BR:
gar03400
]
AOZ07_04625
Enzymes [BR:
gar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AOZ07_04625
DNA replication proteins [BR:
gar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AOZ07_04625
DNA repair and recombination proteins [BR:
gar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AOZ07_04625
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOZ07_04625
MMR (mismatch excision repair)
DNA ligase
AOZ07_04625
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOZ07_04625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ALG28351
LinkDB
All DBs
Position
996451..998727
Genome browser
AA seq
758 aa
AA seq
DB search
MSENAVTPVETTNAPPEADKARYEQLVEQIRTHRDAYYQNDAPLVSDVEYDALFHELQLL
EAQYPILAGQDSPTQEVGGEVSAAFASVTHASRMYSLEDVFSLEELDAWLERAQANAERL
HPQTPVKWLCEVKIDGLALNLTYREGKLVRAATRGDGTTGEDVTHNALTISDIPQELTGS
GWPAEFEVRGEVFIATDDFNAYNEALIAQGKAPLANPRNAAAGSLRQKDPEQTAKRPLRM
FVHGLGRSRDFQMTEQSEAYELMRGWGLPVSPYGRVVGRRAEAKDYISEHGEKRHDLIHD
IDGIVIKVNDLATQEQLGYTSRVPRWAVAYKYPPEEVHTKLLDIQVQVGRTGRVTPFGVM
EPVLVAGSTVARATLHNQEVVKAKNVKIGDTIILRKAGDVIPEIVGPVLPLREGNTGLRD
FVMPTHCPSCGQPLAPAKEGDVDIRCLNAESCPAQLTERVAYLGGRSALDIEALGYEAAA
ALTSGPGQDPQTQGGVILPAGPGPLHNEAELFNLKDKLEELGEVKVWREKRAKGEGTGKF
ELVPYFYSKATAKKPSAPTRSTLKLLDELEKAKENPLWRVLVALSIRHVGPNASRAIATR
YGSMDALLAVLDSGDAVAELSEIDSVGSIIAEALVEWFKVDWHREIVSAWQAAGVKMKDE
QDENIPKNLENLAIVVTGTLENYSRDTAKEAIIVRGGKATGSVSKKTDFLVAGEAAGSKL
DKAQSLGVPVLDEAGFGVLLEQGPDAAREAALAAPTEG
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaaatgccgtaacccccgttgagaccaccaatgctccgccggaagctgacaag
gcccgctatgaacagctggtcgaacaaatccgcacccaccgcgacgcgtactaccaaaat
gacgccccgctggtttccgacgtcgaatacgatgcgctgttccatgaattgcagttgctc
gaagcccagtatccgatcctggccgggcaggattcacccacgcaagaggtgggcggcgag
gtctccgctgccttcgcctcggtcactcacgccagccgcatgtactcgctggaagatgtt
ttctcgctcgaagaactcgacgcgtggctggaacgcgcccaggccaacgccgagcgcctg
catccgcagacaccggtcaagtggctgtgcgaagtcaagatcgatggcctggccctcaac
ctgacctaccgcgaaggcaaactggtgcgcgccgccacccgcggcgatggcaccaccggt
gaagacgtcacccacaacgccctgaccatcagcgacatcccccaggaattgaccggctcg
ggctggccggcagaattcgaggtgcgcggtgaagtcttcatagccaccgatgactttaat
gcctataacgaagcgctgattgcccagggcaaggcgcccttggccaacccgcgcaatgct
gccgctggcagcctgcggcaaaaggatcccgaacagaccgccaagcgcccgctgcggatg
tttgtccacggcctggggcgaagccgcgacttccagatgaccgagcagtccgaggcctat
gagctcatgcgcggctggggccttccggtgtccccctacggcagggtcgtgggcagacgg
gccgaagccaaggactacatttcggagcatggcgaaaaacgccatgacctcatccatgac
atcgacggcatcgtcatcaaggtcaatgacctggccacccaggagcaactgggctacacc
tcccgcgttccacgctgggcggtcgcctacaagtaccctccggaagaggtccacaccaag
ctcctggacatccaggtccaggtgggccgcaccggacgtgtcaccccctttggggtgatg
gaaccggtgctcgtagccggctccaccgtagcccgtgccaccttgcacaaccaggaagtg
gtcaaggccaaaaacgtgaaaatcggcgacaccatcatcctgcgcaaggccggcgatgtg
attccggaaatcgtcggaccggtcttgccgctgcgtgaaggaaacaccggcctgcgcgat
tttgtcatgcccacccactgcccatcctgcggccagccattggcgccggcgaaggaaggg
gatgtggacatccgctgcctcaacgccgaatcctgcccggcgcagctcaccgaacgcgtc
gcctaccttggcgggcgcagcgcgctggatatcgaagccctgggctatgaagccgccgcc
gcgttgaccagtggccccgggcaggacccgcagacccaaggcggcgtcatccttccagca
ggtcccggccccctgcataacgaagcagaactgttcaacctcaaggacaagctggaagaa
ctgggcgaggtcaaggtctggcgtgaaaagcgcgccaagggcgagggcaccggaaaattc
gagctggtcccgtatttctattccaaggccaccgccaaaaagccatccgcaccgacccgc
agcacgctcaaactgctggacgaactggaaaaggccaaggagaacccgctgtggcgcgtg
ctggtggcgctgtccatccgccatgtcggccctaacgcatcacgggccatcgccactcgc
tatgggtccatggacgcgttgcttgccgtcctggactccggcgacgccgtggccgaattg
agcgaaatcgattcggtcggatccatcattgccgaggcgctggtggaatggttcaaggtg
gactggcatcgcgagatcgtctccgcatggcaagccgccggcgtgaagatgaaagatgag
caggacgagaacatcccgaaaaatctggaaaaccttgccatcgtcgtgaccggaacgctg
gagaattattcgcgggacaccgccaaggaagcaattatcgtgcgcggcggcaaagccacc
ggcagcgtgtcgaagaagaccgacttcctggtcgccggcgaagccgccggctcgaaactg
gacaaggcacagtcactgggagttccggtgctcgacgaagccggctttggagtgctcctg
gaacaaggaccagacgccgcgcgcgaggcagccctcgccgcacctacggaaggctaa
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