Gracilinanus agilis (agile gracile opossum): 123239440
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Entry
123239440 CDS
T07702
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gas03036
]
123239440 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
gas03400
]
123239440 (SMCHD1)
Chromosome and associated proteins [BR:
gas03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
123239440 (SMCHD1)
DNA repair and recombination proteins [BR:
gas03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
123239440 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Terminase_6
Motif
Other DBs
NCBI-GeneID:
123239440
NCBI-ProteinID:
XP_044522655
LinkDB
All DBs
Position
1:547292613..547468036
Genome browser
AA seq
2002 aa
AA seq
DB search
MAASGGGGGSGSAESGRSGRRTVFLFDRREEQSEVGERALHLDKGADFSSFRNAVCQALG
ISSGEKFVITTTNRKEITHDNFNENVQDGVTLYLLQSVTQLLLSATKERIDFLPHYDTLV
KSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSIHIKLLFDESQGKPAVAVIDN
GRGMTSKQLNNWAVYRLSKFTRKGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFF
VGQSARMISKPSDSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSAHITNDDERF
LHNLILEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNETNAT
TKEVGPFNNIDMEISVFEKGKVPKIINLREIKDDMQTLYINTAADSFEFKSHVEGEGVVE
GIIRYHPFLYDKETYPDDPCFPSKLKDDDDDDDCFIVEKGARGKRPIFECFWNGRLIPYT
TVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTR
IFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTIFKGIITRTDLPSKRMQSPWATYSAIE
WDGRTYKAGQLVKTTKTLPLFYGSIVKFFLYGDHDGDVYATGGEVQIAMEPQALYDEIKT
VPITKLDRTIPEKIVKKYVEDEMARLPDRLSVTWPEGDELLPNDVKPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRSLPSKTFKFSVKEGKPEKFSVGLLDPPFRVGVPFSI
PLELQDEFGHTTQLVTEIKPVLEASGLSLQYEDISKGPNCVIRGVTAKGHVNSYQGKNFS
LKVILPGLKEESQILKIRLLPGPPRQLKVKPDSDFLVIENGTAFPFQVEVLDESGNITAQ
PKLIVHCKFLGAPNLPVYSVDCSNAGTSILTGPPFHVQNIKKDHILKARIEIPSCKDVPA
VEKTIRLLPSSHVAKLQIFSVEGQKAIQIKHQDEINWIAGDVMHNLIFQMYDEGEREIII
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCKLKGTKTVQMGQELQGEIEVIITDQYGNQIQTFTSNCLNSLGVSGNGLDK
SNMKTIWQENTQTIIIKGIKFNPGPPGNKELCFAWREFSDFLRVQLISGPPAKLLLVNWP
ELTEPIPVINGKELPNPLTVQLCDQWENPSSVPLVKISLVKAAILKLSPSNQQHKTDENG
VANLGVFSVSAPRGEHTIQVKATYNKNSLEGPIIRLMVLPDPEKPVRLNVKYDKDVSFSA
GDIFTDFMVSVISEDESVIKNINPTRISMKMWKLPGSGNRQPANVETFNCSKIKENDKEE
GFFYFRDKVIPNKAGNYYIQFAFTVDKSTILNSDQILIDVIPNEPVKLVPDCLPSTPAVS
NVPPIANRTLVKDLSLNIVDEHNNRTGTNLIGKIIAKIKSSNEEDTEIPLFNGKVRMVEF
PFIKGSAEIKDLVLAENSPGRDSTEYFIVFEPQLPALSRILEPYCLPFMFYNDFRKQQQM
AALTKERDQLSQSIVLYRNLFDASNQLVSEMKCQAQEAGTKEVHLRNELKKQHLNIPTTQ
QIPHIDMLLKQKISEQEGLKKQPRRSCTLPNYPKGNPDILGKIAHLAQIEDDEAAKVISW
HLASDMDCVVTLTTDAARRIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKNYFRP
IGNPVFARDLLTFPDNTDHCQTVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPLPRLYQTLAGQIDLLQQYRSAVCKLNSVT
KELNVQIDYLNTPDMQKKKQELSEQEKNLERIEQKLGMTPTGKGELVRQAAKLNMSDSPI
PSKRMRRETTKKLNRLITKSDE
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtctggcggcggcggcggcagcgggtcggccgaaagcggcaggagcggtcgc
cgcacggtgttcctgttcgaccggcgcgaagagcagtccgaggttggggagcgcgcgctg
cacttggacaagggcgccgacttctcgagcttccgtaacgccgtctgtcaggcacttggg
atttcatctggagagaagtttgttatcacaacaacaaacagaaaagaaattactcatgat
aactttaatgaaaatgttcaagatggggtcactctgtacttacttcagtcagtcactcaa
ttattgctttctgcaacaaaggaacggatcgacttcttaccacactatgacactttggtt
aaaagtggcatgtatgaatattatgccagtgaaggacaaaatcccttaccattcgccctt
gcagaattaattgacaactctctctctgctacttcacgtaatactggtattcgaagtatt
cacatcaaattgcttttcgatgaatcacaaggaaagcctgcagttgctgtgattgataat
ggaagaggaatgacctctaagcagcttaacaactgggctgtgtataggttgtcaaagttt
acaagaaaaggtgactttgaaagtgatcattcgggatatgtccgtcctttaccagtgcct
cgtagtttaaacagtgacatttcatattttggtgttgggggcaagcaagctgttttcttt
gttggacaatcagccagaatgattagcaaaccttcagattctcaagatgttcatgagctc
gtactctctaaagaggattttgaaaagaaagaaaaaaataaagaagcaatttatagtggc
tatattagaaacaggaagccatcagactctgctcatatcacaaatgatgatgagaggttt
ctacataatcttatccttgaggagaaagaaaaagatagctttactgcagtggttattaca
ggagtacaaccagaacacatacagtacctgaaaaattattttcatctttggacaagacaa
ttagcacatatttatcattactatattcatggaccaaaaggaaatgaaacaaatgctaca
acaaaagaagttggaccattcaacaacattgatatggaaatttctgtgtttgaaaaaggg
aaagtgcctaagattatcaaccttagagagatcaaagatgacatgcagactttatatatc
aatacggcagcagatagttttgagttcaagtctcatgtagaaggagaaggtgtggttgaa
ggaatcattcgctatcatcctttcttatatgataaggagacttatcctgatgatccatgt
tttccatcaaaattaaaagatgatgatgatgatgatgactgtttcatagtagaaaaagga
gcaagagggaaaagacccatttttgaatgtttttggaatggaagattaataccttacact
actgtagaagactttgactggtgtgctcctcctaagaagcgaggccttgcaccgattgaa
tgctacaatagaatttctggtgcattattcactaatgataaatttcaggtcagcacaaat
aaactcacttttatggatctagaactaaagctgaaagataagaacactctttttacaagg
atttttaatggccaggagcaacggatgaaaattgaccgagaatttgctttgtggttgaaa
gactgtcatgagaagtatgacaaacaaataaaatttactatttttaaagggataattaca
cgtacagaccttccttctaaaagaatgcagagtccatgggctacatactctgcaatagaa
tgggatggaaggacatacaaagcagggcagttagttaagacgaccaagacacttccgctc
ttttatggaagcatagtaaaattttttctttatggtgatcatgatggagatgtatatgct
acaggaggggaggttcaaattgcaatggaacctcaagctttatatgatgaaattaaaact
gttccaatcacaaagcttgataggacaatacctgagaaaattgtaaaaaaatacgtagaa
gatgaaatggcaaggcttccagatcgattatctgtaacttggcctgaaggagatgaattg
ttaccaaatgatgtcaagcctgctgggactcctattggcgcattaagaattgaaatactg
aataaaaaaggagaagccatgcaaaagcttcctggtacaagtcacggagggtcaaagaaa
ctactggttgaactcaaggttattttacattcttcaagtggaaataaagaaataatttca
catatcagtcagcatgggggcaaatggccttattggttcaagaaaatggaaaatattcaa
aaacttggcaattacacattaaaacttcaagtcgtattaaatgaaagtaatgcagacact
tatgcaggccggtcattgccatcaaaaacatttaaattttctgtgaaagagggtaaacca
gagaaattttcagtgggcctcctggatcctccatttcgtgttggagttccattcagtatt
cccctggagttgcaggatgaatttggtcatactactcaactggtaactgaaattaagcca
gttcttgaagcaagtggcttgtccttacaatatgaagacatcagcaaagggccaaattgt
gtaattaggggtgttactgctaagggccatgtaaattcttaccaaggcaagaactttagt
ctgaaggttattctaccaggtttaaaagaagaatcccagattttgaaaattagattactc
cctgggcctcctcgtcagttgaaagtgaagccagattctgattttctagtcattgaaaat
gggacagctttcccatttcaggtggaagttttagatgaatcaggaaatatcacagcacag
cccaaattgattgttcattgtaagtttttaggtgctccaaatcttcctgtctacagtgtg
gattgtagtaatgctggaactagtattttaactggacctccatttcatgtacagaatata
aagaaagaccacatacttaaagcaaggattgaaataccaagctgtaaagatgttccagct
gtagagaagactattagattgctccccagtagccatgttgcaaaactgcagatattcagt
gtagaaggccaaaaagcaattcagatcaaacaccaggatgaaattaactggatagctgga
gatgtcatgcataatctcatctttcagatgtatgatgaaggagaaagagaaattattata
acatctgctttagctgaaaaaattaaggttaattggacacctgagattaataaggaacat
ttgctgcagggtttgctacctgatgtgcaagtaccaacatctgtgaaagatatgagatat
tgccaggtttcattccaagatgatcatgtgtcattggagagtgcatttactgtaagacca
ttgcctgatgaaccaaaacaccttaaatgcaagttaaaaggaacaaaaacagtacaaatg
ggtcaagaactccaaggagaaatagaggtaataattacagatcagtatgggaatcagatt
caaactttcacatcaaattgtttaaattctttgggagtttctggaaacggacttgataaa
tccaatatgaaaacaatttggcaggagaacacacagactataattataaaaggcataaaa
tttaacccaggtcctcctggaaacaaggagctctgctttgcatggcgtgagttttctgac
tttctccgggtacaactaatttctggaccaccagctaaacttctcctggtaaactggcca
gagttaacagagcctattccagtgatcaatggaaaagaattaccaaacccccttacagtt
caactttgtgatcagtgggaaaatccttcttctgtaccactagttaaaataagtcttgtg
aaagcagcgatcttaaaactcagcccttcaaatcagcagcacaaaactgatgaaaatggt
gtggctaatttgggagtttttagtgtttctgcccctaggggagaacatactatccaggtt
aaagctacctataacaagaattcccttgaaggacctataattaggctaatggttcttcca
gaccctgaaaagcctgtgcgtctaaatgttaaatacgataaagatgtttccttttctgca
ggagatatttttactgatttcatggttagtgttatttctgaagatgagagtgtaattaag
aatattaatccaacacgaatttctatgaaaatgtggaaactcccaggcagtggaaaccga
caaccagctaatgtagaaacatttaattgtagtaaaataaaggaaaatgacaaggaggaa
ggcttcttttatttcagggataaagtgattccaaacaaagcgggaaattattacatccag
tttgcctttacagttgacaaatctactattctcaacagtgaccagatattaattgatgtc
atacctaatgaaccagtcaagttagttccagattgtctaccatctaccccggctgtttct
aatgttccacctattgccaataggaccttagtgaaagacctatccctcaatatcgtggat
gaacataataatcgtactgggactaatttgattggcaagataattgctaaaattaaaagt
tccaacgaagaagatactgagattccactttttaatgggaaagttagaatggttgaattt
ccatttatcaagggatcagctgaaatcaaggatctagtgctggcagaaaatagccctgga
agagacagtactgagtatttcattgtatttgaacctcaactgccagctttatcgagaata
ttggaaccttactgtctgccatttatgttttataatgactttaggaagcagcagcagatg
gcagcacttacaaaagagagagaccagctatctcagtccattgtactttatcgaaattta
tttgatgccagcaatcagcttgttagtgaaatgaaatgccaagcccaagaagcaggtaca
aaagaagtccatttgaggaatgagctaaaaaaacagcatctaaacatcccaacgacacaa
cagatacctcacattgacatgcttctgaaacaaaagatatctgaacaagagggactaaag
aaacaacctaggagatcatgtactcttccaaactacccaaaaggcaatccagacattttg
ggaaagattgcacacctggcacagattgaagatgatgaagctgcaaaggttatttcttgg
cacttggcaagtgatatggactgtgtagtcactctaaccactgatgctgctcgtaggatc
ttcgatgaaactcaaggtcgtcaacaggtgttaccacttgattctatttataagaagact
cttccagattggaacaggcctcttcctcatttaagaaatggaaaaaattatttcagacct
attggtaatccagtatttgccagagatttgttaacatttccagacaatacagaccattgt
caaacagtgtttgggatgctattaggagataccatcattctggacaatttggatgctgcc
aatcattatagaaaagaggttgttaaaatcacccattgtcctactttgctaacaagagaa
ggtgatcgaattagaagtaatggaaaatttgggggcctacaaaataaggctcctccaatg
gacaaacttcgaggaatggtatttggtgccccactgccaagactttaccagaccctggct
ggacaaatagatcttctccagcaatatcgttcagctgtgtgcaaactcaatagtgtgact
aaggaacttaatgttcaaatagactaccttaatactccagatatgcagaagaaaaaacag
gaacttagtgaacaagagaaaaatctggaacgtatagaacaaaaacttggtatgactcca
acaggtaaaggtgaattagtacgtcaagcagctaaactcaatatgtcagacagtccaatc
ccttctaaaagaatgagacgggaaacaacaaaaaaactaaataggctcataaccaaatca
gatgagtga
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