Gracilinanus agilis (agile gracile opossum): 123247611
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Entry
123247611 CDS
T07702
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123247611 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gas03041
]
123247611 (EFTUD2)
Spliceosome [BR:
gas03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123247611 (EFTUD2)
Complex C
U5 SnRNP specific factors
123247611 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
123247611
NCBI-ProteinID:
XP_044532492
LinkDB
All DBs
Position
4:complement(200507412..200553967)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGREAKDLDEMDDDDDDDDMGDHDDDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFVLEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacacagacctctatgatgagtttgggaattatattggaccagagctagattctgat
gaagatgatgatgaattgggtagagaagccaaagatcttgatgagatggatgatgatgat
gatgatgatgacatgggagaccatgatgatgatcatcccggaatggaggtggttttgcat
gaggacaagaaatactacccaacagctgaggaagtctatggccctgaagtagagacaatc
gtgcaggaagaagacactcagcctctcacagagccaattattaaaccagtaaaaaccaaa
aaattttctctgatggagcagacattacctgtcaccgtgtatgagatggacttcttggca
gacttgatggataactcagagcttatcagaaatgtgaccctttgtggacatctacaccac
ggcaaaacctgttttgtagattgcttaatagagcaaactcacccggaaatcagaaagcgc
tatgatcaagatctctgctacacagacatcctgttcactgagcaagagaggggcgttggc
atcaaaagtactccagtgacagtggtcctgccagataccaagggaaagtcttacctcttc
aatatcatggacacaccaggacatgtgaacttttctgatgaggtaacagctggcttgcgc
atctctgatggggtagtgcttttcatcgatgcagctgagggggtgatgctgaacactgag
cgactgatcaaacacgctgtgcaggagaggctggcggtcactgtgtgcatcaacaagatt
gaccgactgatcctagagctcaaacttccaccaacagatgcctattacaaactgcgacac
attgtagatgaggtcaatggattaatcagcatgtattccactgatgagaacctgatcctc
tccccgcttctgggcaacgtctgtttttccagctcccaatacagcatctgtttcacactg
ggctcctttgccaagatctatgccgacacttttggtgatatcaattaccaagaatttgcc
aagaggctatggggtgacatttacttcaatcctaaaacgcggaagtttaccaaaaaggcc
ccaaccagcagttcccagcgaagttttgtggagtttgtcttagagcctctttataagatc
ttagctcaggtcgtgggagatgtggacaccagcctcccaaggaccctggatgaactgggc
atccacctcaccaaagaggagctgaagttgaacatacgccctctccttaggctggtctgc
aaaaagttctttggggagttcacaggctttgtagatatgtgtgtgcagcatattccttct
ccaaaggtgggcgccaagcctaagattgagcatacttataccggcggtgtagactcagac
cttggtgaggccatgagcgactgtgatcctgatgggcctctgatgtgccacaccaccaaa
atgtacagtactgatgatggggtgcagttccatgcctttgggcgggtactgagtggtacc
atccatgctgggcagcctgtgaaggtgcttggagaaaactatactttggaagatgaagag
gattcccagatctgcactgtgggccggctgtggatttctgttgccaggtaccacattgaa
gtgaatcgagttcctgcaggcaactgggttttgattgagggtgtggatcagcctatagtg
aagactgctacaatcactgagccccgaggcaatgaggaggctcagatcttccgaccttta
aagtttaataccacttcagtcatcaagatcgcagtggaaccagtcaacccctcagaatta
cccaagatgttggatggtctacgaaaggtcaacaagagctacccttccctcaccactaag
gtggaagaatctggggaacacgtgatcctgggcactggggagctctacttggactgcgta
atgcatgacttacggaagatgtactcagagatagacatcaaggtggctgacccagttgtc
acattttgtgagacggtggtagaaacttcttctctcaagtgctttgctgaaacacccaat
aagaagaacaagattaccatgattgctgagcctcttgagaagggtctggctgaggacata
gagaatgaagtggttcagatcacttggaacaggaagaagttaggcgagttcttccagaca
aagtatgactgggatttgctggctgctcgttctatttgggcctttggccctgatgccact
ggtcccaacattcttgtggatgacactttgccctcagaggtggataaagctctgttgggc
tcagtgaaggatagcattgtccaagggttccagtggggcaccagagaagggcccctctgt
gatgaattgattcgcaatgtgaaattcaagatcttggatgcagttgttgcccaggaacca
ttgcaccgaggagggggccagatcattcccactgccaggagggttgtctattctgccttc
ctcatggcaaccccccgtctaatggagccctactactttgtggaagttcaagcccctgca
gactgtgtctctgcagtctatactgtgttggccaggcgcagaggccatgtgacacaggat
gcacctatcccaggctctccactctataccatcaaggccttcatcccagctattgactca
tttggttttgaaactgacctccggacccatacccagggacaagccttctctctgtctgtt
ttccaccattggcagattgtacctggtgacccactggataaaagcattgtcatccgtccc
ttggagccacagccagctcctcacttggcccgggagttcatgatcaagactcgtcgtagg
aagggtctgagcgaagatgtgagcatcagcaagttcttcgatgatcctatgttgttggag
ctcgccaagcaggatgttgttctcaactaccccatgtga
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