Gasterosteus aculeatus (three-spined stickleback): 100174890
Help
Entry
100174890 CDS
T07457
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04010
MAPK signaling pathway
gat04120
Ubiquitin mediated proteolysis
gat04140
Autophagy - animal
gat04144
Endocytosis
gat04620
Toll-like receptor signaling pathway
gat04621
NOD-like receptor signaling pathway
gat04622
RIG-I-like receptor signaling pathway
gat05132
Salmonella infection
gat05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100174890 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
100174890 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100174890 (traf6)
04140 Autophagy - animal
100174890 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
100174890 (traf6)
04621 NOD-like receptor signaling pathway
100174890 (traf6)
04622 RIG-I-like receptor signaling pathway
100174890 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
100174890 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
100174890 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
100174890 (traf6)
04121 Ubiquitin system [BR:
gat04121
]
100174890 (traf6)
Enzymes [BR:
gat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100174890 (traf6)
Membrane trafficking [BR:
gat04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
100174890 (traf6)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
100174890 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
TRAF6_Z2
zf-RING_5
RING_XB3-XBAT31
TRAF3_RING
zf-RING_11
U-box
zf-TRAF_2
Prok-RING_4
zf-rbx1
DM
zf-C2HC_3
CEP104_ZnF
BLI1
Motif
Other DBs
NCBI-GeneID:
100174890
NCBI-ProteinID:
XP_040056702
UniProt:
G3PYF8
LinkDB
All DBs
Position
II:21216834..21221558
Genome browser
AA seq
574 aa
AA seq
DB search
MASAESGKGSLQEDSYEGPVGGELSGCALAMMEKERESLLSPSESPGTFISGSSASLQAP
APLQGYDVEFDPPLESKYECPICLMALRNAIQTPCGHRFCKNCIEKSIRDTGQRCPVDNE
RLLEDQLFPDNFAKREILSLTVRCPNSDCADKMELRHLENHLGRCQFATVPCSQCQQAVR
KSRLEEHQTAECQKRPVSCPDCVASFFYEERKLHQQRCPFAIVKCLFCDLELIRDQIESH
CDTDCPKAPIACNFSAFGCKESMQRHNLAQHMQEFTQMHMRYMAEFLRGLSLNGTTPKSL
WAPAPSAYPEDQGATAALAAVCSGPRGAPSSMSSNSCAPSQPAEGMQRLREMDGRLVKQD
HQLRELIILKETQAGQLAELRRRVSLLEDTVKELESQQCHGIFIWRLRGFSAHLRNQEAG
QPVVEHSPGFYTGRPGYKLCLRLHLQTPNAPRCSNFISLFVHTMQGAFDGQLSWPFQGTI
RLAILDQGPEAQHHVEVMETKPDLQAFQKPLIQRNPKGFGYVTFLHLHQLTQRAFVKDDT
LLIRCEVTPRFDNVLHRDGPTVQPRGPEASVSRD
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgcagaaagcggtaaggggagtttgcaggaggacagctatgaagggcccgtc
ggaggagagctgtccggctgcgccttggcgatgatggaaaaggaacgggaatccctcctg
agcccgtcggagagccccggcaccttcatcagcggctcctccgccagcctccaggcccct
gcgcccctccagggctacgacgtggagttcgacccccccctcgagagcaaatacgagtgc
ccgatctgcctcatggccttgaggaacgccattcaaacgccctgtggtcaccgtttctgc
aagaactgcatcgagaagtccatccgcgacacgggacagaggtgccccgtggacaacgag
aggctgttggaagaccagctgttcccggacaactttgccaaacgtgagatcctatcgcta
accgttcgctgtcccaactctgactgtgccgacaaaatggagctccggcatttagagaat
cacttggggcggtgtcagtttgccactgtgccttgctcacagtgccagcaggcggtgaga
aagagccgcctcgaggagcaccaaaccgccgagtgccaaaagagacccgtgtcctgtccc
gattgtgtggcgagctttttctacgaagagagaaagcttcatcagcagcggtgtccgttc
gccatcgtcaagtgcctgttctgcgacttggagctcatcagagaccagattgaatctcac
tgtgacacagattgcccgaaagcaccaatcgcctgcaacttcagcgccttcgggtgcaag
gagagcatgcagcgccacaacctggctcagcacatgcaggagttcacgcagatgcacatg
cgctacatggccgagttcctgcgcggcctcagcctcaacggcaccacgcccaagtccctg
tgggcgccggcgccctccgcttaccccgaggatcaaggggccacagcagcattggcggcc
gtctgcagtggaccaagaggggccccgagcagcatgagcagcaacagctgtgcgccgagt
caacccgctgaggggatgcagaggctcagggaaatggacggacggcttgtaaagcaggac
caccagctgcgggagcttatcatcctaaaggaaacgcaggccggccagctcgctgagctc
aggcgccgcgtgtcgctgctggaggacaccgtgaaggagctggagtcgcagcagtgccac
ggcatcttcatctggcgcctcagaggtttctccgcccacctgcggaaccaggaggcgggc
cagccggtggtggagcacagccccggcttctacacgggccgcccgggctacaagctgtgc
ttgcgcctccacctgcagacccccaacgcgccgcgctgctccaacttcatctccctcttt
gtccacaccatgcaaggggcgttcgacgggcagctgagctggcccttccagggcaccatc
cgcctggccatcctggaccagggccccgaggctcagcaccacgtcgaggtgatggagacc
aagccggacctgcaggccttccagaagccgctcatccagcgcaaccccaaaggcttcggc
tacgtcacctttctgcacctgcatcagctgactcagagagcctttgttaaagatgacact
ctgctcattcgctgcgaagtgacgccgcgctttgacaatgtgcttcaccgcgacgggccg
accgtgcagcccaggggacccgaggcctcagtttcgagggactaa
DBGET
integrated database retrieval system
