Gasterosteus aculeatus (three-spined stickleback): 120808162
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Entry
120808162 CDS
T07457
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1 isoform X1
KO
K16857
thrombospondin 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04115
p53 signaling pathway
gat04145
Phagosome
gat04148
Efferocytosis
gat04350
TGF-beta signaling pathway
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
120808162 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120808162 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120808162 (thbs1b)
04148 Efferocytosis
120808162 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
120808162 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
120808162 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120808162 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120808162 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120808162 (thbs1b)
Membrane trafficking [BR:
gat04131
]
Endocytosis
Phagocytosis
Opsonins
120808162 (thbs1b)
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120808162 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
EGF
TSP1_CCN
cEGF
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
120808162
NCBI-ProteinID:
XP_040016760
UniProt:
A0AAQ4PGX7
LinkDB
All DBs
Position
XVIII:complement(6737376..6751808)
Genome browser
AA seq
1165 aa
AA seq
DB search
MKLTGIFLLLMLWTCEGARVAESRDDNSVFDLFEHVQVPKKSQAVTLVKGDDPYSPAYKI
LNPDLIPPVSESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGPVFEIVS
NGKANTLDIVFSTENKQQVVSIEDVDLATGHWKNITLFVQEDRAQLFAGCDEVNTAELDA
PIQSILTLETPDSAQLRIGKGAVRDRFMGVLQNVRFVFGASLEAVLRNKGCQSSLTADSM
ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVSMFKELKGLGVVVKELSSELRQMTD
ENKLIKNRVGVCLHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANATVPDG
ECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTRDCYL
QECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKVCEGEGRQTEKCQ
ESPCPINGNWGPWSPWDACTLTCGSGVQTRKRMCNDPAAKYGGKECVGNAKDTQMCNKKA
CPVDGCLSNPCFAGAKCISFPDGSWKCGKCPVGYTGNGIKCKDVDECKEVPDACFEFNGV
HRCENTDPGYNCLPCPPRYAGPQPFGRGVAQAAAKKQVCTARNPCLDGSHDCNKNARCNY
LGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNLPNSG
QEDYDKDGIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNSNPDQ
TDTDNNGEGDACAVDIDGDGIQNEKDNCPFVYNVDQKDTDLDGVGDMCDNCPLEHNPDQV
DSDDDRVGDTCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDNDGIPD
DKDNCRLAFNPDQLDADGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQMVPL
DPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDDYAGF
VFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKMVNSTTGPGEHLRNALWHTGN
TPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGNIYDKTYAG
GRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacgggaatatttttgctattgatgctttggacctgcgagggtgcgcgggtc
gcagagagccgagacgacaacagcgtgttcgacttgttcgagcacgtccaagtcccaaag
aagagccaagcggtcaccctggtgaagggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctgatccccccggtctccgagagcgcctttcgggacctgatcgactcc
atccacgccgagcgcggattcctcctgctgctcaacttcaagcagttcaagcggacccgc
ggcagcctgctgaccgtggagaagcgcgacggctccgggcccgtgttcgagatcgtctcc
aacgggaaggccaacaccttggacatagttttctccaccgagaacaagcagcaggtggtt
tccatcgaagacgtggatctggccacgggccactggaagaacatcacgctgttcgtccag
gaggaccgggcgcagctgttcgcgggatgcgacgaggtgaacaccgcggagctggacgcg
cccatccagagcatcctgacgctggagacgcccgacagcgcgcagctcaggatcggcaag
ggagccgtgagggacaggttcatgggggtcctgcaaaacgtgaggtttgtgtttggagca
tcactggaagccgtcctccgcaacaaaggatgccaaagctcattgacggccgactccatg
atcctggagaacctcaatggttcctcagccatcaggaccgaatacactggacacaaaacc
aaagacctgcagatggtctgtggcttctcctgtgaggacctagtgagcatgttcaaggag
ctgaagggcctcggtgtggtggtcaaggagctgtccagtgaactccgccagatgacggat
gagaacaagctgattaagaaccgcgtcggcgtctgcctccacaacggcatcgtacacaag
aacaaagacgagtggaccgtcgatgactgcaccgagtgcacttgtcagaactcggctact
gtgtgccgcaagatctcctgccccctgatcccctgtgctaatgctactgttcctgatgga
gagtgctgcccacgctgtggaacaccgagcgactatgcagaagacggctggtcgccgtgg
tctgaatggacccattgttccgtgtcgtgtgggcggggcatccagcagcgtgggcgctct
tgcgaccgtatcaataacaactgcgagggcacctctgtgcagacccgcgactgctacctc
caggagtgtgacaagcgattcaagcaggatggcagctggagccattggtcaccctggtcc
tcctgctctgtaacatgtggtgcaggcgtcataacccgcatccgcctctgcaactccccc
acccctcagcttggaggcaaggtctgcgagggagagggccggcaaaccgagaagtgtcag
gaatctccgtgccccatcaacggtaactggggaccctggtcaccatgggatgcctgcact
ctcacctgcggatccggtgtccaaactcggaaacgcatgtgcaatgaccccgcagcaaag
tacggcggcaaagagtgtgtcggtaatgccaaggacacccagatgtgcaacaagaaagcc
tgtccagttgatgggtgcctgtctaacccctgctttgctggagccaagtgcatcagtttc
cccgatggttcgtggaagtgtggaaagtgtccagttggatacaccggcaatggcattaag
tgtaaagatgtagatgagtgcaaggaggtcccagatgcttgctttgagtttaacggtgtg
caccgctgtgagaacaccgatcccggctacaactgcctgccctgccctccccgctatgca
ggaccccaaccgtttggcagaggtgttgcgcaggctgcagctaagaaacaggtgtgcacg
gctcgtaacccatgcctcgatggaagccacgactgcaacaagaacgcccgctgcaactac
ctcggacacttcgccgaccccatgtaccgctgcgagtgcaagccgggctacgctggcaac
ggtcacatctgtggagaagatacagacctggatgggtggcccaatgctgacctggtgtgc
gtggagaacgccacctaccactgcaaaaaggataactgtcccaacctcccaaactctggg
caggaagattacgataaggatggcatcggagatgcttgtgataatgatgatgacaatgat
ggcattcctgatgacagggacaactgcccgttcgtgtacaaccccaggcagtatgactat
gaccgcgatgacgtgggtgaccgctgtgataactgcccatacaatagtaaccctgaccaa
actgacacagacaacaatggagagggagacgcctgcgctgtggatattgatggggatggc
atacagaatgaaaaggacaactgcccctttgtgtacaacgtcgaccagaaagacacggat
ctggacggagtgggagacatgtgcgataactgtccactggaacataatcctgatcaggtg
gattcagatgatgaccgcgtgggagacacatgtgacagcaaccaggacattgatgaagat
ggacaccagaacaacctggacaactgtccgtacatccctaatgccaaccaggccgaccat
gacaaggacggcaagggagacgcctgtgaccacgatgacgacaatgacggcatccctgac
gacaaggacaactgcagactggccttcaaccccgaccagctggacgctgacggtgatggc
cgtggagatgcttgcaaagacgactttgatcaagacaacgttcctgacatctacgacgtg
tgtccagagaactttgacatcagtgagacagacttccgcaagttccagatggttcctctt
gaccctaaaggcacctcgcagattgatcccaactgggtcgtccgccatcagggcaaagag
ctggtgcagaccgtcaactgcgaccctggcatcgctgttggttaccacgagttcaattct
gtggacttcagcgggactttcttcatcaacacagagagggatgatgattatgccggcttt
gttttcggctaccagtccagttccaggttctacgtggtgatgtggaaacagataacgcag
acgtactggtcgaacaaacccaccaaggcccagggctactcaggcctgtcgattaaaatg
gtcaactccaccactggcccgggggagcacctcaggaacgccctgtggcacacaggaaat
accccaggacaggtccgcactctctggcatgatcccaagaacgttggctggaaagacttc
accgcctacagatggcatctgatccacagaccaagaacaggcctcattagagttgtgatg
tacgagggcaaaaaaatcatggcagactccggtaatatctatgacaagacatatgccggc
ggaaggctaggtctgtttgtcttctcacaagagatggtatacttctcggacctcaagtat
gaatgcagagatgtttaa
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integrated database retrieval system
