Gasterosteus aculeatus (three-spined stickleback): 120808439
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Entry
120808439 CDS
T07457
Symbol
otofa
Name
(RefSeq) otoferlin isoform X1
KO
K19949
otoferlin
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120808439 (otofa)
Membrane trafficking [BR:
gat04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
120808439 (otofa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
Ferlin_C
FerB
dsrm_Ferlin
FerI
Motif
Other DBs
NCBI-GeneID:
120808439
NCBI-ProteinID:
XP_040017290
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All DBs
Position
XVIII:complement(8605311..8660979)
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AA seq
2084 aa
AA seq
DB search
MMSLMVHLKTAGHLRGKGDRMAKVTFRGLSFYSRVAENCEDVAHFNEIFRWPIASRLDGN
EMLEIQVYNYSKVFSNRLVGTFCMVLQKVAEEGHLELTDTLIDDNNTSIKTSVTIEIRYQ
SMDGSVGVWSDGEFLDVPEDRDGMFAFETESLLSGQSRGSGTSPGRSLQGSIPTFRKAGK
GVFSAMKLGKIRSSRDDHKRGDEPAVLDMEDLDRKAMRLAGFVDPDTISLASVTAVTTNV
SNKRSKPDIKMEPSSGRPVDYQISITVIEARQLIGLNMDPVVCVEIGDDKKYTSMKESTN
CPYYNEYFVFDFHVPPDVMFDKIIKLSVIHSKNLLRSGTLVGTFKMDVGTVYSQPEHQFY
HKWAILSDPDDITAGCKGYVKCDIAVVGKGDNIKTPHKANETDEDELEGNLLLPEGIPVE
RQWARFYVKIYRAEGLPKMNTNIMANVKKAFIGENRDLVDPYVQVQFAGQKGKTSVQKSS
YEPIWNEQVVFTELFPPLCKRIKVQIRDSDKVNDVAIGTHFVDLRKISNDGDKGFLPTLG
PAWANMYGSTRQYTLMDEHQDLNEGLGEGVSFRARLLLSVAVEILDTTSPELMSSTEVQV
ESVSNISESATGKIDEFFLFGSFLEATMIDRKIGDKAISFEITIGNYGNQIDGVSKPSSR
KKKKKDSENEEEESELIHNSSDDEADEDGDLVSVSSTPPMKPVITDRNYFHLPYFEKKPC
VYIKSWWQDQRRRLYNSNMMDKIADKLEEGVNDVQEIIKTEKAFPERRLRGVLEELSVGC
SRFVTLANKDVNQAGRTKLDRERLKSCMREMDSMGQQAKQIRTQVKKNIVKEKLKLVHNF
LQKLRFLADEPQHSIPDVFIWMMSNNKRIAYARVPSKDILYSIVDEETGKDCGKVKAVFL
KLPGKKGFGPAGWTVQSKLELYLWLGLNKQRKDFLSGLPNGFEEIKSAKMSHGLHSVPPV
SLVYNMKQVFQLRAHMYQARSLFAADNSGLSDPFARVFFSTHSQVTEILSETLCPTWDQL
LVFDDVELFGEASELRDDPPIIVVEIFDQDTVGKAEFIGRTFAKPTIKMCDEHYGPPRFP
PQLEYYQIYRGNHAAGELLAAFELLQIPFDAEAIRRALIAVHNFAVPQIKIGQGGRDDLP
PLEGPTDSERGPILPVPLGIRPILSRYRIEVLFWGLRDLKRINLAQVDRPRVDIECAGRG
VQSVLIQNYKKNPNFSTLVKWFEVDLPENELLHPPLNIRVVDCRAFGRYILVGSHAVSSL
RRFIYTTPDKASNNWATAAKLMNGYMVLTNGGSQPRSSPSLSSRTFSRPAGDILVNVDAE
HLVRKMDTVVKLDATSDAVVKVDMTEEESDRDKKQKKKKKKKGGVEEEEETDERMLDWWS
KYFASIETLKETLRAQDAAQAEAEEREDLEIAAEAADITHDDLLLKGSRAKERSKEKKSS
KDKKKAADGSDRRPVKAKVDELVVYDKELESEYGNFEDWLHTFNLYRGKAGDDDEQALDD
DRIVGRFKGSLCMYKLPVSEEITREAGFDPNMGMFQSIPHNDPINVLVRVYVVRATDLHP
ADINGKADPYVVIKLGKSEVKDKENYISKQLNPVFGKSFDIEATFPMESMLTVSVYDWDL
VGTDDLIGETKIDLENRFYSKYRATCGISSNYSVHGYNVWRDPLKPSQILAKLCKDGKID
GPHYGPGGRVKVANRIFQGPTEIEDENGLKKQTEEHLALTVLTHWEEIPRVGCKLVPEHV
ETRPLLNPDKPGIEQGRIEMWVDMFPMDMPAPGPAIDTAPRKPKRYELRVIIWNTDEVIL
EDDDYFTGEKSSDIFVRGFELRVVIWNTDDVILEDDAFMTGEKMSDIYVRGWLKGQQEDR
QDTDVHYHSLTGEGNFNWRFVFPFDYLMAEEKIVISKKESMFSWDETEYKIPPRLTLQVW
DADHFSADDFLGAIELDLNRFPRGAKTAKQCSLAMIRNEQELPTISIFKQKRVKGWWPFV
ARDENDEMELTGKVEAELHLVTAEEAEKSPVGLGRNEPDPLEKPNRPDTSLMWFLGPLKS
IRYFIWHNYRWQILKVLALILLLLMLGVFLYSLPGYLVKKMLGA
NT seq
6255 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctctaatggttcacctgaagacagccggccacctgcgggggaaaggggaccga
atggccaaagttacattcagaggactgtccttctacagccgcgtggcagagaactgtgag
gacgtggctcacttcaatgagatatttcggtggcccatcgccagccggctggatggaaac
gagatgctggaaatccaagtgtacaattacagcaaagtattttccaacagactggtgggg
actttctgcatggtgcttcagaaggtggctgaggagggacacctagagctgaccgacacc
ctcatcgacgacaacaacacttccataaagaccagcgttaccatagagatccgataccag
tcgatggacggctcggtgggggtgtggagcgacggcgagttccttgacgtccctgaggac
cgcgacgggatgtttgccttcgaaacagagagtttgttgtcaggacagagccgcgggtcg
gggacgtctcctggacgatccttgcagggatccataccgaccttcaggaaagcagggaag
ggagtcttctcagccatgaagctcggcaagatcaggagctccagggacgatcacaagaga
ggagatgagccggcggttctggacatggaggacctggaccggaaggcgatgcgtctcgct
ggattcgtggacccggacaccatttctctggcctctgttaccgccgtcaccaccaacgtc
tccaacaagaggtcaaagccagacatcaagatggagccgagctctggacgcccagtggac
tatcagatcagcatcacggtgatcgaggcccggcagctgataggcctcaacatggacccc
gtggtgtgcgtggagatcggagacgacaagaaatacacgtctatgaaggagtccaccaac
tgcccgtactacaatgagtatttcgtctttgacttccacgtccctcctgacgtcatgttt
gataagatcatcaagctttcagtcattcattctaaaaatcttcttcgaagtgggacattg
gtgggaaccttcaagatggatgtagggactgtttactctcagcctgaacaccagttttac
cacaaatgggccatcctgtccgatcctgatgacatcacagcggggtgtaaaggatacgtg
aagtgcgacatcgccgtggtggggaagggcgacaacatcaagaccccacacaaggccaac
gagaccgacgaagacgaattggaggggaacctccttctcccagagggcatcccagtggag
aggcagtgggccaggttttacgtgaagatctaccgtgctgagggacttcccaaaatgaac
accaacattatggctaacgtgaagaaggccttcataggagagaacagagacctggtggac
ccctacgttcaagtgcagtttgctgggcagaaagggaagacttcagtccagaagagcagt
tacgaaccaatttggaacgagcaggtcgtgttcaccgagctgttccctccactctgcaaa
cgcatcaaggtccagattcgagactcggataaggtcaacgatgttgccataggaacccac
tttgttgaccttcgcaaaatatcaaatgatggtgataaagggttcctgcccaccttgggt
cccgcttgggccaacatgtacggttccacccgtcagtacactctgatggacgagcaccag
gacctgaacgagggtctcggagaaggtgtgtccttcagagcccgcctcctgctctctgtc
gccgtggagatcctcgataccacttcccccgagctcatgagctccaccgaagtgcaggtg
gagagcgtctctaacatctccgagagcgccactgggaaaatagatgagttcttcctcttt
ggttccttcctggaggccaccatgatagataggaagattggtgacaaagcgataagtttt
gaaatcacaataggtaactacggcaaccagatagacggcgtaagcaagccttcgtcgaga
aagaagaagaagaaagatagcgagaacgaagaagaggagagcgagctcatacataactcc
agtgacgacgaagcggacgaggacggggacctggtttctgtctcctccactccgccaatg
aagcccgtcatcactgacaggaattatttccatcttccctactttgaaaagaagccgtgt
gtctacatcaaaagttggtggcaggaccaaagacgacgactttacaactccaacatgatg
gacaagattgctgacaagctggaagagggtgtgaatgacgttcaggagatcattaagacg
gagaaggcttttccagagcgcagactgcgcggcgtgctggaagagctcagtgtcggctgc
agtcggtttgtgactctggctaacaaggacgtcaaccaggcgggccgcaccaaactggat
cgagagcggctcaagtcgtgcatgagggagatggacagcatgggccagcaggccaagcag
atccgaactcaggtgaagaaaaacatagtgaaagagaagctgaagctggtgcataacttc
ctgcagaagctccgtttcctagcagacgagcctcagcacagcatcccagatgttttcatc
tggatgatgagcaacaacaagcgcatcgcctacgcccgggttccttccaaggacatcctc
tactccatagtggatgaggaaacgggaaaagactgcggcaaagtcaaagctgtcttcctc
aagctgcctggtaaaaaggggtttggtcctgcaggctggacagtgcagtcaaagctggag
ttgtatctgtggctcggcctcaacaaacaaaggaaggactttctcagtggtctgcctaac
ggttttgaagagatcaaatctgctaaaatgagccacggccttcactcggtgccccccgtc
agcctcgtctacaacatgaagcaggtgtttcagctccgagcacacatgtaccaggctcgc
agtctgttcgctgcggacaacagcggcctgtcggatcccttcgcccgagtcttcttctcc
acacacagccaggtcactgagatcctgagcgagactctttgcccgacgtgggaccagctg
ctggtgtttgacgatgtggagcttttcggagaggccagcgagctgagggatgaccctccc
atcattgtagttgaaatctttgaccaggacaccgtgggcaaggcagagttcataggtcgc
acgtttgcgaagcccaccatcaagatgtgcgacgagcactacggccccccgaggttccca
ccacagctggagtactaccagatctacagagggaaccacgctgccggggaactgctggct
gcatttgagcttctgcagataccttttgatgctgaggcgattagacgagctctaatcgct
gtgcataactttgctgttcctcaaataaagatcggtcaaggagggagggacgacctcccc
ccactcgaagggccgacggactccgagcgcggacccattctgcctgtgccgctgggcatc
cgaccgatcctgagtcgctaccgcatagaggttttgttctggggcttgagggacttgaag
aggatcaacctggctcaggtggatcgtcctcgtgtggacatagagtgtgcaggtcgaggt
gtgcagtctgtcctcatccagaactacaagaaaaaccccaacttcagcaccttggttaaa
tggtttgaagtggaccttccggagaacgagcttctccaccctcctctcaacatccgggtg
gtggactgccgggcatttggccgttatatcctggttgggtcccacgctgtaagcagcctg
agacgtttcatctacaccaccccggacaaggcctccaacaactgggccactgcagctaag
ctaatgaatggctacatggtccttaccaacggcggctcccagcctcgctcctcacccagc
ctttcctcccgcaccttctctcgccccgcaggtgacatcctggtcaacgtggacgccgag
catctggtccgaaagatggacacggtggtcaagttggacgccacgtctgacgccgttgta
aaagttgacatgaccgaggaggagagcgacagagacaagaagcagaagaagaagaagaag
aagaagggaggagtagaagaggaagaggagacggatgagaggatgcttgactggtggtcc
aaatattttgcttcaatcgagacactgaaggagaccctgagagcccaggacgccgctcag
gcggaggcggaggagcgagaggacctggagatagcagcggaggcagcagatatcacacac
gacgaccttcttctgaaaggctccagggcgaaggaaaggagcaaagagaagaaaagctcc
aaggacaagaagaaggctgcggacggctccgacagacggccggttaaagcgaaagtcgac
gagctcgtggtgtacgacaaggagctggaaagtgagtacgggaactttgaggactggctt
cacactttcaacttgtacagaggaaaagccggggatgacgacgaacaagctctggacgac
gacaggattgttggcagattcaagggatccctatgtatgtacaagctacccgtgtctgag
gaaatcacaagagaggccggattcgatcctaacatgggaatgttccagagcatcccgcat
aacgatcccatcaacgtcctcgtccgtgtctatgtggtcagggcaacggatcttcatcct
gctgatatcaatgggaaggccgatccgtatgttgtcatcaagctgggcaagtcggaggtc
aaggacaaagagaactacatctccaaacagctcaatcccgtgtttggcaaatcgtttgac
attgaggccacgttccccatggagtccatgctaacggtgtccgtgtacgactgggacctg
gtcggcactgacgacttgatcggagagacaaagatcgacttggagaatcgtttttacagc
aaataccgagcgacctgtggcatttcatccaactattctgtccatggatacaatgtttgg
cgcgacccattgaagcccagtcagattttggcgaagctctgcaaggacggcaagatcgat
ggacctcattacgggcccggaggcagagttaaagtggccaatcgaatattccagggacct
acagagattgaggatgaaaacggtctgaagaagcagacggaggagcacttggcgctgacg
gtgctgacccactgggaggagatccccagggtgggctgtaagctcgtccccgaacacgtg
gagaccagacccctgctcaacccggacaaacccggcatcgaacagggccgcattgagatg
tgggtggacatgtttcccatggacatgccggctcctggacctgcgattgacacggcaccg
cggaaaccaaagagatatgagctcagggtgattatttggaatacagacgaagtaatactg
gaggacgatgattacttcactggggaaaagtccagtgacatatttgtcaggggctttgag
cttcgtgttgttatttggaacactgatgacgtaattctagaggacgatgctttcatgaca
ggagagaagatgtctgacatctatgtcaggggatggctaaagggacagcaggaggacagg
caggacacagatgtgcactatcactccctcaccggcgagggcaacttcaactggcgcttc
gtcttccccttcgattacctcatggctgaggagaagatcgtcatctccaagaaggagtct
atgttctcctgggatgagaccgaatacaagatccctcctcgtctcacgctgcaggtctgg
gacgccgaccacttctctgctgacgacttcctcggtgcgattgagctggacctgaacagg
ttccctcgtggggccaagacggccaagcagtgctccctcgccatgatccggaacgagcag
gagctacccaccatctccatcttcaaacaaaagagggtcaagggctggtggccgttcgta
gcccgcgacgagaacgatgagatggagctcacgggtaaggttgaagctgagctccacctg
gtgacggcagaggaggcggagaaaagtcctgtaggtcttggacgaaatgagccggatcca
ctggagaaaccaaatcgcccggacaccagtctcatgtggtttctgggccccctgaagtcc
attcgttacttcatctggcacaactaccgctggcagatcctcaaggtcctggcgctgata
ctgctgctgctcatgctgggcgtcttcctctactcactccctggctatctggtcaagaag
atgctgggggcctga
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integrated database retrieval system
