Gasterosteus aculeatus (three-spined stickleback): 120817382
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Entry
120817382 CDS
T07457
Symbol
pdgfrb
Name
(RefSeq) LOW QUALITY PROTEIN: platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04010
MAPK signaling pathway
gat04020
Calcium signaling pathway
gat04510
Focal adhesion
gat04540
Gap junction
gat04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120817382 (pdgfrb)
04020 Calcium signaling pathway
120817382 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120817382 (pdgfrb)
04540 Gap junction
120817382 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
120817382 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
gat01001
]
120817382 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
gat04090
]
120817382 (pdgfrb)
Enzymes [BR:
gat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
120817382 (pdgfrb)
Protein kinases [BR:
gat01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
120817382 (pdgfrb)
CD molecules [BR:
gat04090
]
Proteins
120817382 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
VEGFR1-3_N_Ig-like
Adeno_E3_CR1
RIFIN
Ig_5
VEGFR-1-like_Ig-like
Haspin_kinase
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
120817382
NCBI-ProteinID:
XP_040029482
LinkDB
All DBs
Position
IV:10887322..10909085
Genome browser
AA seq
1095 aa
AA seq
DB search
MRRVTASTLHLTVTVTALFYFCTELRCLEITPDDEELVLAEGSSLTLTCSGSEDTKWEFK
RDDAPHFQAEELQNDGQSHTTSVLTLHNLSWKHTGVYQCNDRHTGETKEVAVFVPDADVW
FIKSSHGMVTKTSEETTIPCVVTNPTINVTLYERDTDLPIRGLYVPSEGYKARLEDRTYV
CRGELDGEVKESQDFYVFSIVVPEAIDAYINASKTILKQGEPLTVNCTVHGVELIYFSWD
IPNRELVVVEPLTEFLPGTTMRSCLVFPRATLAHGGSYACHVHDSIQDQTASASVNVTVL
ERGFVDVKTARKNNISAKLQENVELRVEIEAYPPPQVRWSKEGVSIKRDRTITTRRDHEI
SYVTVLTLVRVRKEQKGRYTVLVTNGDDTKEVTFDLEVQVPSRIKDLTDHHLPGKKHLVT
CVAEGVPTPTIQWYSCDSVHQFSNQTAVWHPLVPEAGVLSILTNVTYSETGKTSQVRSQV
TFHQPQQVTVRCETNNQVGLMDRRDVKLVSSTLYSQVAVLAAVLALVVIIIISIIILIAL
WRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRDNLVLGRTLGSGAFGRVV
EATAYGLTHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKHG
PLYLVTEYCRYGDLVDYLHRNKHTLLQCQAEKNQDDGCLISGGSTPLSQRKGYVSFGSES
DGGYMDMSKDEPTIYVPMQMEQMDNIKYADIQPSSYESPYQQDIYQEQGGSRLELAISDS
SILTYDDLLGFSYQVAQGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDS
NYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYS
ALKRGYRMAKPAHASDEVYDIMKKCWDEKYETRPDFSRLVHSVGNMLADSYKKKYSQVND
NFLKSDHPAVARTKPRLSSPFPIANPAFGTPPPQYAPPDPYNQSAGEFRQEADSQEVITL
YNEYIIPIPDPKPEDVFPFGPSESPASSLALEEETDSMSQDTADTLPEEDRLEETSERDA
LLGFSGTPEVEDSFL
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgggtgacggcatccacgctccatctgactgtcacagttacggctctcttctat
ttctgcaccgagctgcgttgtctggagatcacccccgatgatgaggagctcgtcctggcc
gagggttcctccctcaccctcacctgctccggctcagaagacacaaagtgggagttcaag
agggacgacgcgccgcacttccaagcggaagaacttcaaaacgatggtcagagtcacaca
accagtgttttgaccttgcacaacctgagctggaagcacacgggggtgtatcagtgcaac
gatcgacacactggggaaaccaaggaggtggcagtttttgtcccagacgcagatgtgtgg
ttcataaagagctcacatggcatggtgacaaagaccagtgaggagaccaccatcccctgt
gtggtcaccaatcccaccatcaacgtcaccctgtacgagagggacaccgatctgcccatc
agggggctttatgtgccgagtgaggggtacaaggcacggctggaggacaggacctacgtg
tgtcggggagagctggacggcgaggtgaaagagtctcaggacttctacgtcttcagcatt
gtcgtcccagaggccatcgacgcatacatcaatgcgtcaaagaccatcctgaagcaaggc
gaaccgctgacagtgaactgcacagtgcacggagtggagctgatctatttttcctgggat
atccccaacagggagcttgttgtggtcgagccactcacagaattcctacctggtacgacc
atgcgctcctgcctcgtcttccctcgcgccacgcttgcccacggcggatcctacgcctgc
catgtccacgacagcatccaagaccagacggcctctgccagcgttaacgtcactgtgctc
gagcgaggctttgtcgatgtgaagactgctcggaaaaacaacatttcagcgaagctgcag
gagaacgtggagttgagagtggagattgaagcctacccgccacctcaggtccgttggagc
aaagaaggcgtctcaatcaagagagatagaaccatcacaaccagacgagatcatgagatc
agctacgtcactgtgctcaccttggtgagggtgaggaaagagcagaagggacgctacact
gttctcgtcacaaacggagatgacacaaaggaagtgacctttgacctggaagtgcaagtt
ccctctcggattaaagaccttactgaccaccacctccctgggaaaaaacatttggtgacc
tgtgtggccgagggggtcccaaccccgaccatccagtggtacagctgtgacagcgtgcac
cagttcagcaaccaaacagcagtttggcatccactggtaccggaggccggggtgctgagc
atcctgaccaacgtcacctacagcgagactggtaaaaccagccaggtgcggagccaggtg
accttccaccagccgcagcaggtcacagtgcgctgcgagaccaacaaccaagtaggactc
atggacagacgggacgtcaaactggtgtccagcacgctgtactcccaggtggcagtattg
gctgctgttttagccttagtggtcatcattatcatctccatcatcatcctcattgctcta
tggagaaagaaacctcgctatgagatcagatggaaggtgatagagtccgtgagccaggac
ggtcatgagtacatctacgtggaccccatccacctgccctacgacctggcttgggaaatg
ccacgagacaacctggtgcttggtcgcactcttggatcgggagctttcggcagggtggtt
gaggcgactgcgtacggtctcactcattcccagtccagcacaaaggtggctgtgaaaatg
ctgaaatccacagccaggaggagtgagacgcaggctttgatgtccgagttgaagatcatg
agtcacctgggacctcacctcaacattgtcaacttgctgggagcttgcaccaaacacggc
cccctgtatttggtgaccgagtactgtcgctatggcgacctggtggactacctgcacagg
aacaagcacaccctcctgcagtgtcaagcagagaagaaccaagacgacggctgcctcatc
tctggaggaagcactccgctcagccagaggaaaggctacgtgtcctttgggagtgagagc
gacggaggatacatggacatgagtaaagatgagcccaccatctacgtgcccatgcagatg
gagcagatggacaacatcaagtacgcggacatccagccttcttcatacgagtcgccgtac
cagcaggacatctatcaggaacaaggtggcagcaggttggaactggccatcagtgactcc
tccattctcacctacgacgatctgttgggcttcagctatcaagtggcccaggggatggag
tttctcgcctccaagaattgcgttcaccgtgacctcgctgccaggaatgttctgatctgc
gagggaaaactggtgaagatctgtgactttggcctggccagagacataatgcatgattcc
aactacatctctaaaggcagcaccttcctgcccctgaagtggatggcaccagaaagtatt
ttcaataatttgtacaccaccctgagtgacgtgtggtcatacggcattcttctttgggag
attttcactctaggaggaaccccttaccccgacttgcccatgaatgagttgttctacagc
gctctgaagagaggctaccggatggccaaacctgcacacgcctccgatgaagtttatgac
atcatgaagaagtgctgggacgagaagtacgagacgaggcccgacttctcccgtctggtg
cacagtgttgggaacatgctggcagacagctataaaaagaaatacagccaagtcaacgac
aacttcctgaagagtgaccacccggcagtcgcccgcacgaaacccagactctcctccccc
tttccgatcgccaacccggcattcggcactccacccccacaatacgcccccccggacccc
tacaaccagagcgccggggagttcagacaggaggcagactcacaggaagtcataacctta
tacaacgaatacatcattcccatccccgaccccaagccggaggacgttttccccttcggg
ccgtcagagagtcctgcaagctctctggctctggaggaggagactgactccatgtctcag
gacactgcagacactctcccagaggaggaccggctggaggaaaccagtgagagagacgcc
ctgttgggtttttctgggacacccgaggtagaagacagcttcttgtag
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