Gasterosteus aculeatus (three-spined stickleback): 120817446
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Entry
120817446 CDS
T07457
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120817446 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120817446 (kdm2ab)
04121 Ubiquitin system [BR:
gat04121
]
120817446 (kdm2ab)
03036 Chromosome and associated proteins [BR:
gat03036
]
120817446 (kdm2ab)
Enzymes [BR:
gat01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
120817446 (kdm2ab)
Transcription factors [BR:
gat03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
120817446 (kdm2ab)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120817446 (kdm2ab)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
120817446 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
120817446 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
LRR_6
C1_1
Cupin_8
LRR_4
Cupin_1
Motif
Other DBs
NCBI-GeneID:
120817446
NCBI-ProteinID:
XP_040029625
UniProt:
A0AAQ4PJK7
LinkDB
All DBs
Position
IV:complement(9162468..9174347)
Genome browser
AA seq
1325 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLECVRFKSDLVKHMAGKDF
TFEYIQREGLRDPIIFDTADGLGIQMPDPDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYDTPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIEMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPSNLD
MYENWVLSGKQGDIFLGDKCYDCQRIELKQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYFEMCWYVLERYLYCQTNISHLTPEFQKHSLGIG
LTQADHEANDQTKNVSNGVDSETEVKESIIKEEEFLQEEAPKVAPPQPMLTPFELEGLWN
LLGKLEELPDQKKCVPVGIMDAAALIRDMRTLLEGHTNDNPKFSYTGEPIVKWPERPSWY
QPPTPPPPVIYRPRLAPTLHKPLCQRPTKRSSISALRRRRVRCKRCAACCRKECGTCQFC
HDMRKFGGTGRMKKGCLMRRCLAPALPNTARCAVCGEGEFDESNPSTYSLMECSVCSQIV
HHQCIKEPGDGKINDDLPSCWECPKCYQGKDSESSSDEDSEESEGSTSFPPSKLAYREGI
GVGEGERRGRPSTSASRSTAPPPSQKLLLQHQQNRKRANALELRLKKRIKLERSKILTKQ
ATLDRSPLLLRSKVLSRLRSPTSRLSQGRGRSSSWASGSSYYSSLGGTGSLQQHQQHKRR
RQQQQQQQQQQQQSSLGLVLETQGESCRGRGRGVRLRGGGAGRGMQGGRSHQELAEESED
SSSSSSTNSSSSTNNSSSSSSSSDEQEENGQTLGRGLDKENQPQSRRGGRAAKEKDEAAS
EVANQNGAEEEEEQQGSETRGKDRPFLKVTLQRPTRAKHDPSAIVPKLEAIAPQTATSTI
HNQARILVRPPIRNPGPCPDPHPNRHLAPHARGKHTDTRASHPERPEDTKKTWPSRPAKL
SNGASSSATSELPHLRVPLSALQEGGSEADRENGGSGPGCEREVWVSVFRYLSRADLCVC
MAVCKSWYKWCLDKRLWARIDLSIKRTVTPQALTGIIKRQPVTLDLSWTNISKKQLNWLV
GRLPGLKDLMVAGCSWLTISALCSCGCPLLRSLDLRYADGVKDSQIRDLVTPPGCDNRSQ
FRTMQCLRLAGLDISDSTLRLVIRHMPHLTKLDLSHCNSLSDHSINLLTAVGSSTRNTLT
ELNLGGCSRLTDVSLKYLRRLSCISLLDLRGCKGVSRQACEAFISELSVNALYCLSDEKL
IQRIS
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggaggacccgcatacacggtacagcaaacgcctgcgtacagggacgcgtcgccgctac
caggacgatggaatctcagatgatgaaatcgaagggaaacggatgttcgacctggacgag
aagctggagtgtgtcaggtttaaatctgacttggtcaaacacatggctggtaaagatttc
acattcgagtacatccagagggaaggactccgagaccccattatctttgacacggctgac
ggccttggcatacaaatgccagaccccgatttcagtgtgagtgatgtcaagttgtttgtt
gggagtcgacgcattgtagacgtgatggacgtgaacacccagaagggaatcgagatgtcg
atggctcagtggcgacgctactatgacaccccgccgtctgaaagagaaaaactctacaac
gtcatcagcctggagttcagccacaccaggctggagaatctggtgaaacgtccggcttcg
gtggaccttattgactgggtggacaacatgtggccccgccacctcaaggagagacagaga
gactccaccaatgccatcatagagatgcattatcccaaagtacagaagtactgtctcatg
agcgtgcagggctgcttcacagatttccacattgactttggaggcacttcagtgtggtac
cacatcctgcgaggaggaaaggtgttctggctgattccacccacaccatcaaacctggat
atgtatgagaactgggttttatctggaaaacaaggggacatcttcttgggggacaagtgt
tatgactgtcagaggatcgaactcaagcaagggaacaccttcataatcccatcagggtgg
atccatgccgtgtacacaccagaggacacgttggtgtttgggggaaatttcctccacagc
tttaacatcccaatgcagctcaacatctacagcatcgaggatcgcacccgggtgcctgca
aagttccgctacccgttctactttgagatgtgttggtacgtcctggagagatacctctac
tgtcagaccaacatctcccatctcactcctgagttccagaaacattccctaggcattgga
ctcacgcaggctgaccacgaagccaatgatcaaaccaagaatgtcagtaatggagttgac
agtgaaacggaagtcaaggagagcataatcaaggaggaagagttcctgcaagaagaggcc
cccaaagttgctccacctcagcccatgctgactccctttgagctggagggactgtggaac
ctgttggggaagcttgaagagctgccggaccagaagaaatgtgtacctgtaggcatcatg
gatgctgcagccctgatcagagacatgaggactcttctggaagggcacaccaatgataac
cccaagttctcctacactggagagcccattgtgaagtggcccgagaggccgtcatggtac
cagccccccaccccccctcctcccgtcatttaccgtcctcgcttggcccccaccctccac
aagcctctgtgtcagaggcccaccaaacgctcctccatctcagccctgaggcgccggcgg
gtgaggtgtaagcgctgcgccgcctgctgcaggaaggagtgcggcacctgccagttctgc
cacgacatgaggaagttcggtggcaccggacgcatgaagaagggctgcctgatgagacgg
tgtctagcgcctgccttgccgaacacagcgcgatgtgccgtatgtggagaaggggagttt
gatgaatctaatccgagcacttactcactgatggagtgctctgtctgctcgcagattgtc
caccatcaatgcattaaggaacccggtgacgggaagatcaatgatgatttgcccagctgc
tgggaatgtcccaaatgttaccaaggcaaagactctgagtcttccagcgatgaggacagt
gaagagtcggagggctccacctccttcccgccgtccaaactcgcctaccgggaaggcatc
ggtgtaggggagggggagagacgaggaagacctagcacatctgcatcccggtccacagca
ccaccaccttctcagaaacttctgctgcagcatcaacagaaccgcaaaagagcaaatgca
ctggagctcagactaaagaagaggattaaactagagcgcagcaaaatcctaacgaagcag
gcgaccctggaccgctctcccctgctgctgcgctccaaggttttgtcccggcttcgctct
ccaaccagcagactatctcagggcagaggccgcagctccagttgggccagtggctcctct
tactacagctctctgggggggaccgggtctctccaacagcatcagcagcataaacggcgg
cggcagcagcagcagcagcagcagcagcagcagcagcagtcttcccttggtctggtactc
gaaacccagggagagtcctgcagagggaggggcagaggggtcaggctgcggggaggagga
gcaggaagaggaatgcaaggtggtcgaagccatcaggagttggccgaggagagcgaggac
agcagcagcagcagctccactaacagcagcagctccaccaacaacagcagcagcagcagc
agcagcagcgacgagcaagaggagaatggccagacccttgggaggggtttggataaagag
aatcagccccagtcgaggcgaggaggccgggcagccaaagagaaggatgaggcggcaagc
gaggtggccaaccaaaacggagcagaggaggaggaggagcagcagggcagcgaaacgagg
ggcaaagaccggccctttctgaaagtgacacttcaaaggccaaccagggccaaacacgac
ccgtcagccatcgtccccaaattagaagccatcgcccctcagaccgccacgtccacaatc
cacaaccaagcgagaatcctcgtcaggccccccatcagaaaccccgggccgtgtcccgat
ccacaccccaacaggcacttggcccctcacgctcgcggtaaacacacagacactcgcgcc
tcccaccctgagaggccggaggacactaaaaaaacatggccgagcagacctgctaaactg
agcaacggcgcctcgtcttcggcgacctccgagcttccccacctccgcgtaccgctgtcc
gcgctgcaggaaggagggagcgaggccgacagggagaacggcggcagcggaccgggctgc
gagagggaggtgtgggtgtccgtcttccgttacttaagtcgagcagatctctgcgtctgc
atggctgtctgcaagagctggtacaaatggtgtttagacaagcggctttgggcaaggatc
gacctgagcatcaagcgcaccgttactcctcaggcgctcacaggcatcataaagagacag
ccggtcacactggatctgtcttggaccaacatctctaaaaaacagctcaattggcttgtt
ggtcgcctgcctgggctgaaggatctgatggtggccggttgttcctggttaactatttca
gctctctgctcctgtgggtgtcctctcctccgctctctggacctgcggtatgcagacggc
gtcaaagactcgcagatcagggacctagtcaccccgccaggttgtgacaatcgcagtcag
tttcggaccatgcagtgtttgcgcctagcgggcctggacatcagcgactccactctacgc
ctggtgatccgccacatgccccatttaacaaagctggacctctcccactgcaacagcctc
agcgaccactccatcaacctgctgacggcagtgggctcgtccacacgaaacacgctcaca
gaactcaacctgggaggttgcagtagactgactgatgtgagtctcaagtatctccggcgc
ctctcttgcatctcgctgctcgacctgcgaggctgtaaaggcgtctcccgccaggcctgt
gaggccttcatctccgagctgtccgtcaacgcgctctactgcctgtccgatgaaaaactg
atccagaggatttcctaa
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integrated database retrieval system
