KEGG   Gasterosteus aculeatus (three-spined stickleback): 120817649
Entry
120817649         CDS       T07457                                 
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
  KO
K02084  apoptotic protease-activating factor
Organism
gat  Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04115  p53 signaling pathway
gat04210  Apoptosis
gat05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:gat00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    120817649 (apaf1)
   04115 p53 signaling pathway
    120817649 (apaf1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    120817649 (apaf1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st APAF1_C Beta-prop_EML_2 WD40_CDC20-Fz NB-ARC EIF3I Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 APAF-1-like_WHD Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_WDR75_1st NBCH_WD40 CARD Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N Beta-prop_SCAP PEP5_VPS11_N Ge1_WD40 Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_Vps41 RMC1_N Beta-prop_NWD2_C CARD_2 PROPPIN WD40_like Beta-prop_DCAF4 AAA_16 WDR54 Beta-prop_SPT8 nSTAND1 Beta-prop_WDR11_2nd AAA_22 AAA_18
Other DBs
NCBI-GeneID: 120817649
NCBI-ProteinID: XP_040030002
LinkDB
Position
IV:31110977..31136533
AA seq 1261 aa
MALEEGARSCLMRFRHRLEDDIKPPYLMDHMVTDGVLTGDEEERIKNQPSRKDQAAALLA
LLLMKDNRAYISFYNAMVQEGYNDLANLLHRDLPLGLPEGLKRSTDCCTPYVQTVLSEGG
VPQRPVVFVSRPELVNRVREKLYRLQKEPGWVTVFGMAGSGKSVLAAEAARHHGLIEDCF
PGGIHWLSIGQLDKPDLLVKIQSLCFRLEQSLDSHPLHRPPNSLDEAKERLRFLMLRRHP
RSLLILDDIWDSTVLKAFDLHCRILFTTRNRSLADSVSGSRYEVEVESGLDENKGLEILA
LYTKTKLKGLPEEARSIVRECKGSPLVVSLIGALLREKPNRWRYYLGQLQQKQFKRIRKS
SSYDYDALDQAMAASIEVLPDEHREFYKDLTVLEKDTKVPAKVLAVLWDLETEEVEDILE
EFVNKSLLFVDSHNKPFLYYLHDLQLDFLVEQNRTQLESLHSKVVHQYQQHYKDAHSTSG
DEECLYWIRFLTYHMAKANLFQELYSLMFSLDWVSTKAQLMGPAYLINDYVEYGPILDKE
NSETRSQFQEFLSLNGHHLEQRPFPDVVQLALSQPRTSEVYKQALLQARDRATTGKLYFE
WLNKGSVESLSRLVIHPHQGSIYSACFSQDGAKIASSGASKMLKVFKSTSGEKLMEIQAH
DDEVLCCAFSPDDRLLATCSSDRKVKVWNVERAMLLRVFEEEHEEQVNHCQFTNSTTPRL
LLATCSNDKVLNTKLWNLNKPSSQNTIFGHFEPVNHCCFSPSDTYLSTSSNDGTVKLFHT
SSANEWKTINVRDAFAESDEEVLVKCSTWTADGKRIICAARNAALVFDVETSDMLLEIRT
NRLSTVQYCHACPTSNLLAIAFSNYAVEQCVLQLWDLEANKKMADCSGHLSWVQRVQFSR
DGSQLLSCSDDQTVRLWETNKVHTTSAVCLKRDSDVLFNDEEIIVSAADNCNRLQVRDGR
TGSVLFQSEEKPSRIRCTSMCRQPSAVALGQEDGTVQVLQVPSGNLLATLLGHTKTVLHC
RFSQSGKTLLTSSEDTTIRVWRWQSGECRVLQGHKEQVRCFSLLPDDAKLLSWSFDGTVK
MWDVESGAKLQDIEAHRGAILSCRVSPDGCLFATTSADNTAKLWHCETWKCVHTLSGHRD
CVRSCRFSWDGRRLATGDDNGEIRLWSVMEGTLLRICSRDGKDCMDSLHGGWVTDLHFSP
DNGLLVSTGGYIKWWDVETGEALQTFFTTGTALKRIHVSSDFSTFVTIDSIGILYVLQRV
V
NT seq 3786 nt   +upstreamnt  +downstreamnt
atggcgttggaggaaggggcgcggagctgtctgatgcgctttcgccaccggctggaggac
gacatcaagcccccctacctgatggaccacatggtcactgacggcgtgctgactggcgac
gaggaggagaggataaagaatcagccctccaggaaggatcaggctgcggctctgctggcg
ctgctgctcatgaaggacaaccgtgcttacatctccttctacaatgcaatggtccaggag
ggatacaacgatttggctaatctgcttcatcgtgacctcccactcgggttacctgagggt
ctcaagcgctccactgattgctgcacgccttacgtgcagacagtgctcagtgaggggggc
gtcccacagaggccggtggtgtttgtcagcagaccagagcttgtgaaccgcgtcagggag
aaactctaccggctgcagaaggagcccggctgggtcaccgtcttcggcatggccggctcg
ggaaaatctgtcctggctgctgaggcggccagacaccatgggctcatcgaagactgcttt
cccggtggaatccactggctgtccatcggccagctggacaaaccagacctgctggtgaag
atccagtcattgtgtttccgtctggagcagagccttgactcccaccccctccaccggccc
cccaactctctggacgaggctaaggagcgtctgcgcttcctcatgttgcgcagacatcca
agatccctcctgattctagatgacatctgggacagcacagtgctgaaggcgtttgatctc
cactgtcggatactttttaccaccagaaacagaagccttgctgactctgttagtggctcc
agatacgaggtggaagtggaaagtggtctggatgaaaacaagggactggagatccttgcc
ctgtacactaaaaccaaactcaagggacttcccgaggaggctcgcagcattgtcagagaa
tgcaaaggttccccactggtggtgtcccttatcggggctctactccgagagaaacccaac
cgttggcgctactacctcggccagttgcagcagaagcagttcaagcgaataaggaagtca
tcgtcttatgactacgacgccctcgaccaagccatggcagcgagcatcgaagtcctacca
gacgaacatcgagaattctacaaggacctaactgtgctggagaaggacaccaaagtccct
gcaaaggtgctggctgttctgtgggacctggagacggaggaggtggaggacattctcgag
gagtttgtcaacaagtctctgctattcgtggacagtcacaataaacctttcctgtactac
ctccatgacctccagctggacttcctggtggagcagaatcgcacccagctcgagagcctc
catagtaaagtggtgcatcagtaccagcagcattacaaagatgcccactccacctcagga
gatgaagaatgtctctactggatcagattcctgacctaccacatggccaaagccaacctc
ttccaggagctgtactcgctcatgttctctctggactgggtcagcaccaaggcccagttg
atgggtccggcttacctcatcaatgactacgtggagtatggacccattctggacaaagag
aactctgagacgcggagtcaattccaggagttcctctctctgaacggccaccacctggag
cagcgtccgttccctgacgtggtgcagctggctctgtctcagccacgcacatccgaggtc
tacaaacaggctctgctgcaagcacgtgaccgggccacaacggggaagctctactttgag
tggctgaacaagggcagtgtagagagtctgtcccgactggtgatccacccgcaccagggc
tccatctactccgcctgcttctcgcaagacggagccaagatcgcctccagtggagccagc
aagatgctcaaggtgtttaaaagcacctctggggagaagctcatggagatccaggcccat
gacgacgaggtgctctgctgtgccttctcccctgacgaccgtctcctagcgacctgctcc
agcgacaggaaagtcaaggtgtggaacgtggagagagccatgctgctcagggtctttgag
gaggagcacgaggagcaggtcaaccactgtcagttcaccaactcgacgacgccacgcctg
ctgctggccacctgctccaacgacaaggtcctgaataccaagctttggaacctcaacaaa
ccgtcgtcccagaacaccatctttggccactttgagccggtcaaccactgctgtttctcc
cccagtgacacctacctgtccacgtcctccaacgacggcaccgttaagctgttccacacg
tcgtccgccaacgagtggaagaccatcaatgtgagagacgcgtttgcagagagtgatgaa
gaggtcctcgtcaagtgcagcacctggacggctgacggcaaacgcatcatatgtgcagcc
aggaacgctgctctggtgtttgacgtggagacatcggacatgttgctggagatcagaacg
aatcgcctgagcacggtgcaatattgtcacgcctgtcccaccagtaacctgctggcgatc
gcgttctcaaactacgccgtggagcagtgtgtgttacagctatgggacctggaggccaac
aagaagatggcggactgcagtggccacctgagttgggtgcagcgtgtccagttctctcgt
gatggctcacagctgctctcctgctccgacgaccagactgtcaggttatgggagacgaac
aaggtgcacaccacctcggctgtctgcctgaaaagagactccgacgttctcttcaacgac
gaagaaatcatagtgtccgctgcagacaactgcaaccgactgcaggttcgcgacggccgg
acgggatccgtgttgttccagtcggaggagaagccgtccaggatccggtgtacgtccatg
tgcagacagccctccgctgtggccctgggccaggaagatggcaccgtgcaggtgctgcag
gttccctctgggaacctgctagcgacgctgctcggacacaccaagacggtgcttcactgc
cggttcagccagagcggcaagaccctcctcacgtcctccgaggacaccaccatcagggtg
tggaggtggcagtctggggagtgcagagtgctgcagggtcacaaggagcaggtcagatgc
ttctctcttctccccgatgacgccaaactgctgtcctggtcctttgatggcactgtcaag
atgtgggacgtagaaagtggagcgaagctgcaggacatcgaggcgcaccggggcgccatc
ctgtcctgccgcgtctcgcctgacggatgcctcttcgccaccacctctgccgacaacaca
gctaagttgtggcactgtgagacctggaagtgcgtccacacgctgagcggccaccgagac
tgcgtccgaagctgccggttctcctgggacggccgccgcctcgccacgggagacgacaat
ggggagattcggctgtggagcgtcatggagggcactttgctgaggatctgctcgcgtgac
ggaaaagactgcatggactcgctccacggaggctgggtgaccgacctgcacttctccccg
gacaacggcctgctggtctccactggcggctacatcaagtggtgggacgtggagacgggc
gaggccttgcagaccttcttcaccacggggacggcgttgaagaggatccacgtctcatcc
gacttctccaccttcgtcaccatcgacagcatcggcatcctctacgtcctgcagcgggtg
gtgtga

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