KEGG   Gasterosteus aculeatus (three-spined stickleback): 120821657
Entry
120821657         CDS       T07457                                 
Symbol
rapgef6
Name
(RefSeq) LOW QUALITY PROTEIN: rap guanine nucleotide exchange factor 6
  KO
K08020  Rap guanine nucleotide exchange factor 6
Organism
gat  Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04517  IgSF CAM signaling
gat04530  Tight junction
Brite
KEGG Orthology (KO) [BR:gat00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    120821657 (rapgef6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    120821657 (rapgef6)
SSDB
Motif
Pfam: RasGEF PDZ RasGEF_N RA PDZ_6 cNMP_binding RA_2 PDZ_2
Other DBs
NCBI-GeneID: 120821657
NCBI-ProteinID: XP_040036434
LinkDB
Position
7:29842770..29902637
AA seq 1697 aa
MKMTGAMETSFKLALKKPPPLRSAEDLHAIYCHLYHMDVLSHLREHQLRAMCTSARYERH
EANHILFYADSTATCWYILLSGSVFVKEHMYLARCCFGRQLAGRRGCECITLEPSEMIVV
DNGSEADDGFLQRDGSQRRSRRRFRRVNPRGERELITDGQEPAAYNTLPADLNKMHLTDH
AHQQVMHMPPSQSGCSIASDSGSSSLSDIYQATESELGDVDLSGLPEAAVDSEEEEEEDE
DLERASDTLLGRDLVRECLEKEPADRNDDDIEQLLEFMHQLPAFANMTMSVRRDLCGVMV
FEVVEQAGTVILHDKQELDLWYVILNGAVEISHQEPRAETLCMGNSFGISPSLEKQHMNG
EVRTKGDDCQFVCVAQEDYWRILNHVEKNTHKVEEEGEIVMVKEHRELDRSGTRKGHIVI
KGTPERLIMHLVEEPSVVDPTYIEDFLLTYRTFLSNPMEVGKKLLEWFHMDSLRDTVTRI
VLLWVNNHFNDFEGDPAMTHFLEDFEKHLEATKMKGHLRLLNIACAAKAKWRQVTLQKAS
RESPLHFSVQGGSERGFGIFVESVEAGSKAAEAGLKRGDQIMEINGQNFENISFSKAVDI
LRNNTHLSLTAKTNIFVFKELLSRVVHEKKNGAPHIPKIQEKKGNRFSIPDLPGDMEFPS
DHKSTRKMKANTVSGGRNKIRKMLEKTRFSILPPKPFSDGGVGQSQDDSIVGTKQCRHSV
AIMPIPGNLSSSSPDLLHPASSALDFSNPAALGLYYIPDQVIRVFKADQQSCYIIISKDT
TAKDVVAHAVNEFGLPAAPETYSLCEVSVSPEGVIKQRRLPDQLSKLADRIQLNGRYYLK
NNMETETLCSDEDAQDLLRESHISLLQLSTMEVAAQLSMRDFELFRNIESTEYVDDLFKL
DSSLGSGHLKQFEEVINQETFWVATEILKEPNALKRMKTIKHFIKIALHCRECKNFNSMF
AIISGLNLAPVARLRNSWEKLPSKYEKLFGDLQDVFDPSRNMAKYRNVLSSQSMQPPIIP
LFPVVKKDLTFLHEGNDSSVDGLVNFEKLRMIAKEIRHVVRLTSANMDPALMFRQRKKRW
KSLGSLSQGSTNSNMLDVQGGAHKKRVRRSSLLNAKKLYEDAQMARKVKQYLSNLTVEID
EEKHQVMSLQCEASYSTLSKNLSDRRSTKSDMSPVSLRATLPLGKTQNRVSQVLQVQVPL
NPLRKKSTASKEMGPSNTSSPQVVKKPPVMISSEEWSSKRPSDDSVSMISSLQSSPTVSP
QGSPRKVGGVAKSQNCSQMNLSGSSSSLTSDAGAKAVAVAVAPRNYGIGYGLLPPGGRAD
NLSDSSHSEISSRSSVCSGDSVPAPVTAATAAGTRAPAPVAESSPATHAHLNCDGLPPGT
SSSAAARGYATRAPAFTPSISTEELTPDHASLDSVADSGRGSWTSCSSTSHDSFQSLPRP
CRPWDHGIHGHPLAPGAFRHAQPPIAEVEAAGPAWAGEDAAAAAARHHSRNSSSDLSSQS
RRSWASSGSLSDAYEGNYGTVKRRNAAEHPPSPAEEEGGQSADPAYKTVTSSTEKGLIVY
CVTSPTKDERYRAPPPTPPGYQGLALGDLGLADGVPLPRPPHLRPPDYSVALQRSKLLQS
PGGAGGLAEARRLAVNQHHLLHHHHHHHPHLQHPHPHLLQQDPRTAGSTQSSSRPPSICL
PPREPADSEDDEQVSAV
NT seq 5094 nt   +upstreamnt  +downstreamnt
atgaaaatgaccggagccatggaaacttctttcaaactggctttgaagaaaccgcccccg
ctgcggagcgcagaggacctgcacgccatctactgccacctctaccacatggacgtcctc
tctcacctcagggagcatcagctacgggcgatgtgcacctcggccaggtacgagcgccac
gaggccaaccacatcctcttctacgctgacagcacggcgacctgctggtacatcctgctc
tctggatccgtcttcgtcaaggagcacatgtacctggcgaggtgctgcttcggcaggcag
ctggcggggaggcgaggctgtgaatgcatcactttggagccgtcagagatgatcgtggtg
gataacggcagcgaggcggacgacgggttcctgcagcgggacgggtcccagcggaggtct
aggcggcgcttcaggagagtcaacccccggggggagcgggagctcatcaccgacggccag
gagcctgccgcatacaacacgcttcctgccgacctcaataagatgcaccttacagaccac
gcccatcagcaggtgatgcacatgcctcccagccaatcaggatgcagcatcgccagcgac
tcgggcagtagcagcctgtcagacatttaccaggccacggagagcgagctgggggacgtg
gacctgtccgggctcccggaggcggcggtggacagcgaggaagaggaggaggaggacgag
gacctggagagggcttcggacaccctcctgggccgagacctggtccgcgagtgtctggag
aaagaaccggcagaccgcaacgacgacgacattgagcaactcctggagttcatgcaccag
ctgccggccttcgccaacatgaccatgtccgtgaggagagacctgtgcggcgtcatggtg
tttgaggtggtggagcaggccggcaccgtcattctgcacgacaagcaggagctggacctc
tggtacgtcatcttaaacggggctgtggagatcagccaccaggagcccagagcggagact
ctctgcatgggcaacagcttcggcatctcgccctctctggagaagcagcacatgaacggg
gaggtccgcaccaagggggacgactgccagtttgtgtgcgtcgcccaggaggactactgg
cgcatcctcaaccacgtggagaagaacacgcacaaggtggaggaggagggcgagatcgtg
atggtgaaggagcaccgcgagctggaccgcagcggcacccgcaagggacacatcgtcatc
aagggaaccccggagcgcctgatcatgcacctggtggaggagccgtcggtggtggacccc
acctacatcgaggacttcctgctgacctacaggaccttcctgtccaaccccatggaggtc
gggaagaagctgctggagtggttccacatggacagcctccgggacacggtgacgagaatc
gtgctgctgtgggtcaacaaccacttcaacgacttcgagggcgacccggccatgacgcac
ttcctggaggactttgagaagcatctggaagccacgaagatgaaggggcacctgcggctg
ctgaacatcgcgtgtgcagccaaagccaagtggaggcaggtcacgctgcagaaggcctcc
agggagtcgccgctgcacttcagcgtgcagggcggcagcgagaggggcttcggcatcttc
gtggagtcggtggaagcaggaagcaaggctgcagaggccggactcaagcggggggatcag
atcatggagatcaacggtcaaaactttgagaacatctccttctccaaagcggtggacatc
ctgagaaacaacacgcacctgtccctcacagccaagaccaacatatttgtcttcaaagag
ctcctcagcagggtcgtccacgagaagaagaacggcgctcctcacatccccaagatccag
gagaaaaagggcaaccgcttctccatccccgacctacccggagacatggagttcccctcg
gaccacaagagcaccaggaagatgaaggccaacaccgtgtcgggagggcggaacaagatc
cgcaagatgctggagaagacgcgcttcagcatactgccgcccaaacccttcagtgatggc
ggcgtgggtcagtctcaggacgacagcatcgtggggaccaagcagtgccgccacagcgtg
gccatcatgcccatccccgggaacctgtcgtccagcagccccgacctgctgcacccggcc
tccagcgcgctggacttctccaacccggcagccctgggactctactacatcccggaccag
gtgatccgggtgttcaaggccgaccagcagagctgctacatcatcatcagcaaggacacc
accgccaaggacgtggtggcccacgccgtcaacgagttcggcctcccggcggcgcccgag
acctactcgctgtgcgaggtgtccgtgagcccggagggggtcatcaagcagcgccggctg
cccgaccagctctccaagctggccgaccgcatccagctcaacggcaggtactacctgaag
aacaacatggagacggagacgctgtgttccgacgaggacgctcaggacctcctcagagag
agccacatctccctgctgcagctcagcaccatggaggtcgccgcccagctctccatgagg
gactttgagctcttcaggaacatcgagtccacggagtacgtggacgacctgttcaaactg
gactcctcgctgggcagtggccacctgaagcagttcgaggaggtaataaaccaggagacc
ttctgggtcgccacggagatcctcaaggagcccaacgccctgaagaggatgaagaccatc
aagcacttcatcaagatcgcgctgcactgcagggagtgcaagaacttcaactccatgttc
gctatcatcagcggcctgaacctggcgccggtggcccggctgcgcaactcgtgggagaag
ctgcccagcaagtacgagaagctgttcggggacctgcaggacgtcttcgacccctccagg
aacatggccaagtaccgcaacgtcctgagcagccagagcatgcagccgcccatcatcccg
ctgttccccgtggtcaagaaggacctcaccttcctgcatgaaggcaatgactccagcgtg
gacggcctcgtgaactttgagaagctgcggatgatcgccaaggagatccgacacgtagtg
cggctgacctcagccaacatggacccggccctcatgttcagacagaggaagaagaggtgg
aagagtttagggtctctgagtcagggcagcaccaactccaacatgctggacgtgcagggc
ggcgcccacaagaagcgagtgcgccgcagctcgctgctcaacgccaagaagctgtacgaa
gacgcccagatggccaggaaggtgaagcagtacctgtccaacctgacggtggagatcgac
gaggagaagcaccaggtcatgtccctgcagtgcgaggcctcctacagcaccttgtctaag
aacctgagtgacagacggtccaccaagtcggacatgtctccggtgtccctgcgagccact
ctgcctttagggaagacgcagaaccgggtgtctcaagtccttcaggtccaggtccctctg
aacccgctacggaagaagagcacggccagcaaggagatgggcccttctaacaccagctct
cctcaggtggtgaagaagccccccgtgatgatctcgtcagaggagtggagctccaagagg
ccgtctgacgacagcgtgtccatgatctcctcccttcagtccagccccacggtgtctcct
cagggctccccgcgcaaagtggggggcgtggccaagtcccagaactgcagccagatgaac
ctgtcgggatcttcgtcgtctctgaccagcgacgccggcgccaaggccgtcgccgtcgcc
gtcgcgccgcgcaactacggaataggttacggcctcctgccgcccggcggcagagcggat
aacctgtcggactccagccacagcgagatctcgtcccgctccagcgtctgctcgggggac
tccgtgcccgctcccgttaccgcggcaaccgctgccggcacgcgcgctcccgccccggtc
gccgagagctcgccggcgacgcacgcgcacctaaactgcgacggcctcccgcccggcacg
agttcctcggcggcggcccgcggctacgccacgcgcgcccccgccttcaccccctccatc
tccacggaggagctgaccccggaccacgcctcgctggactccgtggccgacagcgggcgc
ggcagctggacctcctgctcgtccacctcccacgactccttccagagcctcccgcgtcct
tgccggccctgggaccacggcatccacggccacccgctggcgcccggcgccttcaggcac
gcgcagcctcccatcgccgaggtggaggccgcgggtcccgcctgggccggcgaggacgcc
gccgccgccgccgccaggcaccactccaggaactccagctcggacctgtccagccagtcg
cggcgcagctgggcgtcgtccggctcgctgtcggacgcctacgaggggaactacggcacc
gtaaagcggcggaacgccgcggagcacccgccctcgcccgcagaggaggaaggaggccag
agcgccgaccccgcctacaagacggtgacgtccagcacggagaaaggcctgatagtgtat
tgtgtcacgtcccccaccaaggacgagcgttaccgagctccccctcccacccctccaggc
taccagggtctggctctgggggatctgggcctcgcggacggggtccccctgcccaggccc
ccccacctcagacccccggactacagcgtggccctgcagaggagcaagctcctgcagagc
cccgggggggccggcggtctggctgaggctcggcggctggccgttaaccaacaccacctc
ctccaccaccaccaccaccaccacccccacctccagcacccccacccccacctcctccag
caggacccccgcacagccggctccacgcagagcagctccagaccgcccagcatctgcctc
ccgccgcgggagccggccgacagcgaggacgatgagcaagtgtcggcggtgtga

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