Gasterosteus aculeatus (three-spined stickleback): 120825039
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Entry
120825039 CDS
T07457
Symbol
kdm2aa
Name
(RefSeq) lysine (K)-specific demethylase 2Aa isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120825039 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120825039 (kdm2aa)
04121 Ubiquitin system [BR:
gat04121
]
120825039 (kdm2aa)
03036 Chromosome and associated proteins [BR:
gat03036
]
120825039 (kdm2aa)
Enzymes [BR:
gat01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
120825039 (kdm2aa)
Transcription factors [BR:
gat03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
120825039 (kdm2aa)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120825039 (kdm2aa)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
120825039 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
120825039 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
PHD
Cupin_8
C1_1
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
120825039
NCBI-ProteinID:
XP_040042274
LinkDB
All DBs
Position
IX:4045243..4065908
Genome browser
AA seq
1352 aa
AA seq
DB search
MADSKIRQSKRLRAGTRRRYHDDGISDEEIDGRRMFDLEEKVHSERFSSDRILRMEGREL
TYEFIQRGGLRDPIIFDKPDGLGIKMPDPDFSVNDVKMFVGSRRMIDVMDVSTQKGTEMS
MAQWTRYYETPPTLREKLYNVISLEFSHTKLENLVQRPATVDLIDWVDNMWPRHLKERQR
DSTNSITDMQYPKVQKYCLMSVEGCYTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
LYENWVLSGKQGDIFLGDRASDCQRIELKQGCTFIIPSGWIHAVYTPTDSMVFGGNFLHS
FNIPMQLNICNIEDRTRVPLKFRYPFYYEMCWYVLERYVFSMTKTSYLTPEFQKHTLGIG
LKKPCGSDAASEPMMMMEEEEEGEEGCSEEEASEQQSDKPAVKVLLTALELEGMWNLLGK
LEALPSNKKCVPAGIHNAPALITHIKALLKEHANDNQKLSYTGIPIVKWPKRPKWYQPPP
PPPPPPRPKFPSTPIIPRPQKPASSMSVLRRRRVRCKRCEACMRPECGDCNFCRDMKKFG
GPGKLKQTCVLRQCLSPGLPLSAVCEICKEPNQEESGDPSLTLMECSNCAQIVHPACLTV
QGEGVVNKDLPSCWECPKCVLGITDPEFGLTQSSGSDESLAAGNPQLNRPRGPLVLRLGP
GASATLGGPVGTQQDGEVVCCGFFSPHPPLPSCSSSSSASLLLVAAPLPSQPISSRLQYK
GDKSEGVPAKRKSSTLLDARMAKIYRRQRHSRDGDDSASDDDDDDDDDDDEAPHRGKIAL
HSRGSHSSRRGFGANRRSLLRGSSAHRGSRGGLTSSGSSAALKLKRGMGMREGGRRGRGV
RLRGGSRMQRRDESEESDDDDDDDDDDDDDDDDDDDDDEDEEEEEDSEDLDKERLHCRRR
RKHRADDDDDDDGEDSEGQEFDPEEEEMDMLEDEEEDEEEEEEEGRWDSDPEPPVLLVSD
LNDDLLSGSYLTVTLQRPHKAKRHAGSIVPKLEAAMGLRTAGGPQGFIQRKTGPSKTSRL
RSTDPTSDGVTPRGPGRPRLRGNHRGFRDQSSTSSEEEEATAPPASSALSLLSLPSFKDV
GNERGGEKEVWVSVFNYLNRAELLACMTVCKAWYKWTCDKRLWSHVDVSRCSPLSNPALA
GIIKRQPTSLDLSWTPLAKRQLNCLLTRLPGLRELRVAGLSWSCVSAMVSPTLPYLRLLD
LRWCEGIKDSQIKEILIPPGSESSRSRLRNMVTLRLSGLDISESTLRLLQRHMPQLERLD
LAHCKDITDSSIALLAAAGTHTRNSLTELTLAGCSELTDGCLSYLKRLSSLALLDLRGCK
SISRRACDAFISDLSHIALYCMMEEKLIQRLD
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atggccgattctaaaataaggcaaagcaaaagactgcgggccggtacccggcgacgttac
catgacgatggcatttcagatgaggagattgatggaaggagaatgtttgacctggaggaa
aaagtccacagtgagaggttcagctctgaccggatcttgcgcatggaaggaagagaatta
acatacgagttcatccagagaggcggcttgagagacccaatcatctttgacaaacctgat
ggattgggaatcaagatgcctgatcctgacttcagtgtcaatgacgtcaagatgtttgtt
ggcagcagacggatgatcgatgtgatggatgtgagcactcagaaggggacggagatgtcc
atggcccaatggacacgttactacgagactccgccgactctaagagaaaagctttataat
gttatcagccttgagttcagccacactaagctggagaacctggttcaaagacctgcaacg
gtcgatctaatagattgggttgacaacatgtggcctcgtcacctgaaggaaagacagaga
gactcgaccaactctatcactgacatgcaataccccaaagttcagaaatactgtctgatg
agtgtagagggctgctacacagactttcacattgactttggagggacctcggtgtggtac
cacattctcagaggaggcaaggtgttctggctgatcccccccacccctcagaacctggag
ctgtatgagaactgggtgctgtcagggaaacagggggacattttcctcggcgacagagca
tctgactgccagaggattgagctgaagcagggttgcaccttcatcataccttctggttgg
attcatgccgtctacaccccaacggactccatggtgtttgggggaaacttcctgcacagc
ttcaacatccccatgcaacttaacatctgtaatatagaagaccgaacacgggttcctttg
aagttccgttaccccttctactacgagatgtgctggtacgtgttggagcgctatgtcttc
agcatgaccaagacttcctacctcacaccagagtttcagaagcacacgctgggcattggt
ctgaaaaagccgtgcggctcagatgcagccagtgagccgatgatgatgatggaggaggaa
gaagagggggaggagggttgcagtgaagaagaggcctcagaacagcagtctgacaagcct
gcagtaaaagttctgttgactgccctcgagttggagggaatgtggaacctgctgggtaaa
ctggaggctctgccctccaacaaaaagtgcgtcccagcaggcatacacaacgccccggca
ctcatcacacacataaaggctctgctgaaggaacatgccaatgacaatcagaaactgtcc
tacacaggaattcctatcgtcaagtggccaaagcgacccaaatggtaccaacctcctcct
cctcccccacctcctcctcgtcctaagtttccgtccactcccatcattccacgaccccag
aaaccggcctcctccatgtccgtgctgagacggcgcagggtcaggtgtaagcgctgtgaa
gcctgtatgagaccagagtgtggagattgtaacttctgcagagacatgaaaaagtttgga
gggccggggaaactcaagcagacctgtgttctgcgacagtgtctctctccgggccttcct
ctgtctgcagtgtgtgagatctgcaaggagcctaatcaggaggaatctggagacccctcc
ctaactctgatggaatgttccaactgtgcacagatagtccaccctgcctgcctcacggtt
cagggggaaggagtggtgaataaagaccttcctagttgctgggagtgtccaaagtgtgtc
ctggggatcactgatcccgagtttggtttaactcagtcatcaggcagcgatgaatcgttg
gccgccggcaacccgcagctcaaccgtccccgtggccccctggttctcagactgggcccc
ggggcctctgctaccttagggggtcctgtgggtacccagcaggatggggaggtggtctgc
tgtggtttcttctctcctcatcctcctcttccttcctgctcttcctcctcctcagcgtca
cttcttttggtggcggcccctctgccttctcagccaatcagctcgagactgcagtacaaa
ggagacaaaagtgagggcgttccagcgaaacgtaaatcttccaccctgctggatgctcgc
atggcaaagatttaccgacggcagagacacagccgcgacggagacgactctgccagtgat
gacgatgacgatgacgacgacgacgacgatgaagcccctcacagagggaagattgctctc
cattcccggggcagccactcttccaggagggggtttggtgccaaccggagaagcctgctg
agaggaagctccgcccacagaggaagcagaggagggctcacgtcttctggctcctctgcc
gccctcaagctaaagcgaggaatgggcatgagggagggggggcgaagggggcgaggggtg
aggttgaggggaggctctcggatgcagcgccgagacgaatccgaggagtcggacgatgac
gatgacgacgatgatgacgatgacgatgacgacgatgatgatgatgatgatgacgaggat
gaggaagaagaagaagacagtgaagatctggacaaagagagactgcattgccggcgtagg
aggaagcacagggctgatgatgatgatgatgatgatggagaggacagtgaggggcaggag
tttgacccagaagaagaggaaatggacatgctggaagatgaagaggaagatgaagaggag
gaggaggaggaagggcgttgggattctgacccagaaccgccagtcctccttgtgtctgat
ctaaatgatgacctgctgagtggctcctatctgactgtcactctacagcgcccccacaag
gccaagagacacgctggctccatcgttccaaagctagaggcagccatgggtctgaggaca
gcaggaggtccccagggcttcatccagagaaagactggtccgtccaaaacgtcccgactc
cggagcactgaccccacctctgacggagtaaccccgagaggacctggcaggccacgtctg
cggggtaaccacagaggctttagggatcaatcctcaacttcttcagaggaagaggaggcc
acagctcctcctgcgtcctctgctctgtctctgctgtccctgccgtccttcaaggacgtg
ggcaacgagagaggaggggagaaggaggtgtgggtgtctgtgttcaactacttgaacaga
gccgagctgctggcctgcatgaccgtctgcaaggcttggtacaagtggacctgtgataag
agactgtggagccatgtggacgtgagtcggtgcagcccgctcagtaacccggcactagcc
ggcatcattaaacgccagccaacctctctggacctgtcctggacccccctggccaagaga
cagctcaactgtctgctcacaaggctgccagggctccgggagctgagggtagcgggtctg
tcctggtcttgcgtgtcagccatggtctctcccactctgccctacctgcggctgctggac
ctgcgctggtgtgaaggcatcaaagattcccaaattaaagagattctcatcccgcctggt
tctgagtcgtctcgcagcaggctgaggaacatggtgacgctgcgtctgtccggcctggac
atcagcgagtccactctcaggttgctccagcgccacatgccccagctggagagactggac
ctggctcactgcaaggacataacagactcgtctatcgccctgctggcagcagccgggact
cacacccgcaacagtctcacggaactcacactggcaggctgcagtgagctgacagacggc
tgtctgtcttacctgaagcgtctttcctctctggctctgctggatctcagaggctgtaag
agtatcagcagacgagcctgtgacgccttcatctctgacctgtcgcacatcgccctctac
tgtatgatggaggagaagctaatccagcggttggattaa
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integrated database retrieval system
