Gasterosteus aculeatus (three-spined stickleback): 120825659
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Entry
120825659 CDS
T07457
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120825659 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gat03400
]
120825659 (lig4)
Enzymes [BR:
gat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120825659 (lig4)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120825659 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
C8-3_MUC4
Motif
Other DBs
NCBI-GeneID:
120825659
NCBI-ProteinID:
XP_040043330
UniProt:
G3PM28
LinkDB
All DBs
Position
I:complement(27003198..27009489)
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AA seq
909 aa
AA seq
DB search
MEEASSDAAGRPVVAARVPFLHLCNTLEKIQKSKLRPEKSKILGDFIESWRNFHSALHKD
NPKTTDSFYSAMRLIVPSFERDRVAYGIKENMLAKLYIDVLGLPKNGPEAHQLLNYRAPT
TSQGEAGDFAGMAYFVLKKRCASPGTLSIKEVNDFLDSVAINNAGKQKDLVKKSLLHLIT
HSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAADFYNVNTDLNKVCQQLHSPSVSLS
EVSIGLFSAFKPMLAAVANIRNVEKQMGNGPFYIQTKLDGERIQLHKDGDVYKYFSRNAF
EYTQQFGGSPLQGSLTPHIHNAFKGHVVNCILDGEMMAYNPTAETFMQKGSKFDIKRLME
DSELQTCFCVFDVLLVNDRKLGRETLKQRHETLQTVFTPVKGRLHLVPKADARTMHEVVN
ALNDAIDGREEGIMVKDPMSLYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGAYWGKGRR
GGMMSHFLCAVAEAPKLGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWRVYRKNDPPA
SILCGTEKPEVYIEPCNSVIIQVRAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMTL
AELDQFRGKASGKLASRHLRIDGDEPQKKKRKLPAKAKKAVGIIDHFKPQDLSGVTKETD
MFEEVEFCILNGTADHPKAELEKGVARCGGFVVQNPGRDTWCVIAGAENVRVRNLVSSDQ
HDVVWASWLLDCLARKEVAPWQPRHMIHMSPSTREHFAKEYDSYGDSYVADTDEQQLREV
FGRMSGADASAVASASQVEQRYGWEDLPTSMFRPCRVYMDRYAEMGKPQTALAASCLEIR
ALELRYHGGAVTQSLEEGVTHVVVTEETRLLGFRTLRRSFEKKFMIVRDSWVTDSIEAGR
LMNEADYLV
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggcgtccagcgatgcagcgggtcggcccgttgttgctgctcgggttcctttc
cttcacctttgtaatactttagagaaaatccagaagtctaaactccgcccggagaaatcc
aagatcctcggggatttcattgagtcatggaggaacttccattcggctctgcacaaagac
aaccccaaaacgaccgactccttctactcagccatgcgcctcatagtgccctccttcgaa
cgagaccgggttgcgtacggcataaaagagaacatgttagccaaactctacatcgacgtg
ctgggcctcccaaagaacggcccggaagcccatcaactgttgaactaccgcgctccgacc
acgtctcagggggaagccggagactttgctggcatggcgtactttgtgctgaagaaacgg
tgcgccagcccagggaccctcagcatcaaggaagttaacgacttcctggactcggtggcc
atcaacaacgcgggcaagcagaaggatctggtgaagaagagcctgctgcacctcatcacc
cacagctcggctctggagcagaaatggctcatccggatgatcctgaaggacatgaagctc
gggatcagcaaggagacggtgctgcaggtcttccacccggatgcggccgatttctacaac
gtcaacacggacttgaacaaggtgtgccagcagctccacagcccctccgtgtccttaagc
gaagtctccatcgggctcttctccgccttcaagcccatgttggcggccgtggcgaacatc
cgcaacgtggagaagcagatggggaacggccctttttacattcagaccaagctggacggg
gagcgcattcagctgcacaaagacggcgacgtgtacaagtacttcagcaggaacgccttt
gaatacacccagcagttcggaggatcgccgctgcagggctctctgacgccgcacatccac
aacgcgttcaaaggccacgtcgtcaactgcatcctcgacggggagatgatggcgtacaac
ccgaccgcggagaccttcatgcaaaaagggagcaagttcgacatcaagaggctcatggag
gactccgagctgcagacgtgcttctgcgtcttcgacgttttgctggtcaatgaccggaag
ctcggcagggagaccctgaagcagcgccacgagacccttcagacggtcttcacgccggtc
aaggggcggctgcacctggtgccgaaggccgacgcccggaccatgcacgaggtggtgaac
gcgctgaacgacgccattgacggcagggaggaggggatcatggtgaaggatcccatgtct
ctctacaagccggacaagaggggggaggggtggctgaaaataaagcccgagtacgtggac
ggcctgatggatgagctcgacctgctgatcgtcggcgcctactggggcaaaggaaggcgg
ggcggtatgatgtcccacttcttatgcgccgtcgccgaagccccaaagctcggcgagaag
ccctccgtattccacacgctgtgccgcatcggctcgggctacaccatgaaggagctgtac
gacctcggcctgaagctggccaagcactggcgcgtctaccgcaagaacgacccgccggcg
tccatcctgtgcggaacggagaagccggaggtctacatcgagccctgcaactcggtcatc
atccaggtccgggcggccgagatagtcggcagcgacatgtacaagaccaactgcaccctg
cgcttccccaggatcgagaagatccgcgacgacaaggagtggcaccagtgcatgaccctg
gcggagctggatcagttccgcggcaaggcgtccgggaagcttgcctcgcggcacctccgc
atcgacggcgacgaaccgcagaagaagaagcgcaagctgccggccaaagccaagaaggcg
gtcgggatcatcgaccacttcaagccgcaggacctctccggggtcaccaaggagacggac
atgtttgaggaggtggagttctgcatcctgaacggcacagcggatcaccccaaggccgag
ctggagaagggcgtggccaggtgtggaggtttcgtggtgcagaacccgggtcgggacacc
tggtgcgtgatcgccggcgctgagaacgtgcgcgtgaggaacttggtctcgtccgaccag
cacgacgtggtgtgggcctcctggctgctggactgcctggcccggaaggaggtggcgccg
tggcagccgcgccacatgatccacatgtcgccctccacccgggagcacttcgccaaggag
tacgacagctacggcgacagctacgtcgccgacacggacgagcagcagctgagggaggtg
ttcgggcggatgagcggcgcggacgcgtcggcggtggcgagcgccagccaggtggagcag
cgctacggctgggaggaccttcccaccagcatgttcagaccctgccgggtctacatggac
cgctacgccgagatgggaaaaccgcaaaccgccttggccgccagctgtttggagataagg
gctctggagttgcgctaccacggcggtgcggtgacgcagagtttggaggaaggagtcact
catgtcgttgtcacagaggagacgagacttctgggtttcaggactctgagacgcagcttc
gagaagaagtttatgattgtgagggactcatgggtgacggattccattgaagccgggcgc
ctgatgaatgaggcggactacttggtctga
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