Gasterosteus aculeatus (three-spined stickleback): 120832521
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Entry
120832521 CDS
T07457
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04115
p53 signaling pathway
gat04145
Phagosome
gat04148
Efferocytosis
gat04350
TGF-beta signaling pathway
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
120832521
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120832521
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120832521
04148 Efferocytosis
120832521
09143 Cell growth and death
04115 p53 signaling pathway
120832521
09144 Cellular community - eukaryotes
04510 Focal adhesion
120832521
09142 Cell motility
04820 Cytoskeleton in muscle cells
120832521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120832521
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120832521
Membrane trafficking [BR:
gat04131
]
Endocytosis
Phagocytosis
Opsonins
120832521
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120832521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
EGF_CA
TSP1_ADAMTS
TSP1_CCN
EGF
Motif
Other DBs
NCBI-GeneID:
120832521
NCBI-ProteinID:
XP_040054793
UniProt:
A0AAQ4P0U1
LinkDB
All DBs
Position
XV:complement(2609790..2618321)
Genome browser
AA seq
1169 aa
AA seq
DB search
MMLWGICVLLMLWSCEGARLAESRGDNSVYDLFEMARVNKRHNGVTLVKGVDPHSPAYKV
LNADLIPPVPDSYLRDLLDSIQAERGFLLLVNLKQFKKTRGSLLTIEKKDGSGSIFEIIS
NGKANTLDVVYSTLSQQQVVSIEDADLATGHWKNVTLFVQDDRVQLFVGCEEINVSEMDL
PISKVLSQELADVARLRIGKGVVRDKFMGVLQNFRFIFGTPLDAILRNKGCQSGATLTDV
LTLNNPVNGSSPAIRADYTGHRTKDPQAVCGFSCEDIAGMFKELKGLGVVVKQLSNELRK
VSEDSTLLKNQMNIPGGICIHNGFEHKDKDEWTVDSCTECTCQNSATVCRKISCPLMPCA
NATVPDGECCPRCGPITEDGWSPWSDWTHCSVTCGRGIQQRGRSCDRINSNCEGTSVQTR
DCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGEGRQT
EICQKSPCPVNGGWGPWSPWDTCTVTCGGGVQTRKRLCSDPVPKYGGKDCVGDASLSQLC
NKQDCPIDGCLSSPCFPGAKCASFPDGSFRCGRCPPGFSGNGVACKDIDECKEVPDACHT
HNGVHRCENTEPGYNCLPCPARFSGPQPFGRGVEQATAKKQVCKPRNPCQDGSHDCHRNA
NCIYLGVFSESMYRCECKPGYAGNGRICGEDSDLDGWPNIDLHCVENATYHCKKDNCPNL
PNSGQEDHDKDGLGDECDRDDDNDGIPDDRDNCPRVYNPAQYDADRDDIGDSCDNCVYEA
NTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPLEHN
PDQFDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGNGRGDVCKDDFDQDNILDIHDVCPENFAISETDFRRFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFSGTFFVNTDRDDD
YAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGDTAGQVRTLWHDPKNIGWKDFTAYRWHLTHRPTSGLIRVVMYEGKRIMADSGNIYDK
TYAGGRLGLYVFSQEMVYFSDLKYECRDT
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtggggcatctgtgtgctgttgatgctttggagctgtgaaggagccagattg
gcagagagtcgaggcgataacagtgtatatgacctatttgaaatggcccgggtaaacaag
agacacaacggagtgactttggtcaaaggtgtcgacccccacagccctgcatacaaggtc
ctcaacgcagacctcatccccccggtgccagacagctacctcagggacctcctggactct
atccaggccgagaggggcttcctcctcctggtcaacctgaagcagttcaagaagacccgg
ggcagccttttgaccatcgagaagaaggacggctccggatccattttcgagatcatctcc
aacggcaaggcgaacactctggacgtggtctactccactctgagccagcagcaggtcgtg
tccatcgaggatgctgacttggccactggacactggaagaacgtcacgctgtttgtccag
gatgaccgggtgcagcttttcgtcggctgcgaggagatcaacgtgtcagagatggatttg
ccgatctccaaagtgctgtcccaggagttggccgacgttgccaggctcaggatcggaaag
ggagtcgtgagggacaaattcatgggagtgcttcaaaacttccgcttcatctttgggacc
cctctggatgctatactgagaaataagggatgccagagtggagctaccttaactgacgtc
ctcaccctgaacaacccggtcaacggctccagcccagccattagggccgattacaccggc
cacagaaccaaagatccgcaggctgtctgcggcttctcttgtgaggacatcgccggaatg
ttcaaggagctcaagggactcggcgttgtcgttaaacagctgtcgaatgaactgcgcaaa
gtgtctgaggacagcacgctgctgaaaaatcaaatgaacatccccggtggaatttgcatc
cacaacggattcgaacacaaggacaaagatgaatggaccgtggatagctgcaccgagtgc
acctgccagaactctgctaccgtgtgtcgcaaaatctcctgccctctgatgccgtgtgcc
aacgccaccgtgccagatggagagtgctgccctcgctgtggaccaatcacagaggatggc
tggtccccctggtctgactggacccattgttcggtgacttgtggccggggcatccagcag
cgcgggcgctcctgtgaccgcatcaacagcaactgcgagggcacctccgtccagacccgt
gactgctaccctcaggaatgcgacaaacgcttcaaacaggacggcggttggagccactgg
tctccctggtcatcgtgctccgtgacctgcggcgagggcgtcatcacccggatacgcctc
tgcaactctcccacgccgcagatggggggcagggactgccagggggaagggcgtcaaacg
gaaatctgccaaaagtcaccctgtcctgtcaatggaggttggggaccttggtcaccatgg
gacacttgcactgttacctgtggcggaggagtccagacccgcaaacgtctctgctccgac
cctgtccccaaatatggaggaaaggattgcgttggggacgcctccctgtctcaattgtgc
aacaaacaggactgccctattgatggttgtctctccagtccttgcttccccggagcaaag
tgcgccagcttccccgacggctctttcaggtgtggcaggtgtccacccggcttctctggg
aacggcgtcgcctgcaaagacatcgatgaatgtaaagaggtgcccgatgcttgccacacc
cataacggagtccatcgctgtgagaacaccgagcccggttacaactgccttccctgccct
gcgcgcttctctggtcctcagcccttcggaagaggagtggaacaggcgactgctaaaaaa
caggtctgcaaaccccgtaacccctgccaagacgggagccacgactgccataggaatgca
aactgcatctacttgggcgtcttttccgagtccatgtaccgctgcgagtgcaagccaggg
tacgctgggaacggccgtatttgcggagaggacagtgaccttgacggatggccaaacatt
gacctgcattgtgtggagaacgccacctaccactgcaagaaggacaactgccccaacctt
cccaactccggccaggaagatcatgacaaagatggcctgggtgatgaatgtgaccgcgat
gatgacaacgatgggatccccgatgatagggacaactgcccaagagtgtacaaccctgcg
cagtatgacgcagacagagacgacattggcgacagctgtgacaactgcgtgtacgaggcc
aacaccgatcaaacggacactgacaacaatggcgagggcgatgcctgcgctgttgacatt
gatggcgatggcattctgaacgagaacgacaactgcccgtatgtttacaacgtggatcag
agagataccgacagggacggggtgggtgatcactgcgacaactgccctctggagcacaac
cccgaccagttcgactctgactcagatcgcgtaggagacaagtgcgacaacaaccaggac
attgacgaggatggtcaccagaacaacttggacaactgcccctacatacccaatgccaac
caggcggaccacgacaaggacggcaagggtgacgcatgcgaccacgacgacgacaacgac
ggcattcccgacgacaaggacaactgcaggctggcgttcaacccggatcagctggactct
gacggcaacggccgcggtgacgtgtgcaaagacgattttgaccaagacaacattctggac
atccatgacgtgtgcccggagaactttgccatcagcgaaacagacttccgcagattccaa
atggttcctctggaccccaagggcacgtcccagattgaccccaactgggtggtccggcat
cagggcaaggagttggtgcagaccgtcaactgcgaccccggcattgccgttggttacgac
gagttcagcgcagtggacttcagtggaacgttcttcgtcaacacggacagagatgacgac
tacgccggtttcgtgtttggctaccagtcgagctcccggttctacacagtgatgtggaaa
cagatcacacagacctactggtcgcacacgcccacaagagctcaaggctactcgggcctg
tcaatcaaagtggtcaactccaccactgggcccggtgagcatctgaggaacgccctgtgg
cacaccggagacaccgcaggacaggttcgcactttgtggcacgaccccaagaacattggc
tggaaggacttcactgcctacagatggcatctgacccacaggcccacgtctggacttatt
agagtggtcatgtatgaaggcaagaggatcatggccgattctgggaacatctacgacaag
acgtacgccggtgggcgactagggttgtacgtcttctctcaggagatggtttacttctca
gacctcaaatacgaatgcagagatacataa
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