Gasterosteus aculeatus (three-spined stickleback): 120835233
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Entry
120835233 CDS
T07457
Symbol
si:ch1073-335m2.2
Name
(RefSeq) msx2-interacting protein isoform X1
KO
K25100
Msx2-interacting protein
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
120835233 (si:ch1073-335m2.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gat03036
]
120835233 (si:ch1073-335m2.2)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
120835233 (si:ch1073-335m2.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
SPOC
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
120835233
NCBI-ProteinID:
XP_040059900
LinkDB
All DBs
Position
XVII:complement(8768899..8786196)
Genome browser
AA seq
3247 aa
AA seq
DB search
MVRETRHLWVGNLPEHVREEKIVEHFKRYGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQ
KAHNAVNKMGDRDLRTDYNEPGSVPSAVRGLEDGSPSSSRDVTGFTRGTVGPVFGPPVSL
HTREGRYERRIDGSSESRERAYDHSPYGHHERSGTFDRQRHYNADYYRDRSMFAAAGPGS
SAIAGSFEASDPHFDSRIRDSFTLTNSSRRDLYRDDRGRRVDRTYHHRRSRSSHSSQSRH
PSPQRTTGQTPKAPHSPKRAPLSPGRGPRSRSHSRSSSSDSVSSTSSTGSGSDSNSSSSD
GSRAHSVQSSATHAPTQSSMGLDSDEPRRSFGIKVQNLPVRSTDTSLKDGLFHEFKKHGK
VTSVQIHGASEDRYGLVFFRQQEDQEKALTVSKGKLFFGMLIEVTAWNGPETESENEFRP
LDGRIDEFHPKATRTLFIGNLEKTTSYQQLLDIFQRFGEIVDIDIKKVNGVPQYAFVQYS
DIASVCKAIKKMDGEYLGSNRLKLGFGKSMPTTCVWLDGLATSVTEQYLTRHFCRYGHVV
KVVFDRLKGMALILYNNTDFAQAAVRETKGWKIGGNKIKVDFASQESQMAFYRSMQASGQ
DIRDFYEIPTERREERRPPYHEFTAERAYYENIRTPGIYPEEARRDFAARSRERFPELDH
YQGDHFDPRYHEDPRDYRDYRDPFEQDIRKYTYIQRERERERERFEADRRWSPSQPRRPG
TPTVSPSPSERAPRDPERRVYSQSSERSGSVSSVSPPHFDKSEKTLPELAAKSDKSSQPD
RVASAEKTKRVKRKEKGDKDKAEKIKSRKAKGKSPSNPPPETEIDTGFEGASGRGRGSDQ
DALEKPKSKGDSESPTANPLSTVDAVKSEKSEISKGEGSDLDGKNRPKKHPKPDIGNDGK
DMSVDSDRLAARKRRFADSGGRTIRQKRSRHEEEEDVFPSADFGAGASCMKESDTDKSKD
SQRRDSRLKADKSGTPKDSQEDLGGQREKSEGSLDPVDSKGHPGHTSSRRFSHEGTTEQS
ATREQEHPAAFKFAAQNADPDKSVKNKADHVDIDLSQSCRKQMEQNRRLHQQQQQRESDK
SDRPGSPQGSETEDLEHRSLVHEVGKPPEDVTDNFPSHKLKKLDLFETDPGIKRERVYRS
FRQKSEDPEWNSISSPGHQLFSHHVEEDFVDPSQKELCRNEEKVHPDVELLVKRTHNTPA
NKPNTPLLSVEEEQQKRWESRVKQELLPDLNFSRSLTKNVHNRKRLEYGIWHDLEPGEVR
SDSEEDRENKPNSPMPSTSMPFTERPRVDRFSDPKLAHLERNKFYSFALDQTITPDTKAL
LERAKSLSSSREDNWSFLDYDSHFASLRNRKDTEKVESAPRPTPSWYMKKKKIRSGSEDK
LDDRKEEPKPEEQERRELFASRFLHSPVFELDSRRLQHLERKHEEPEYAQNQHPGQQGTV
DGELDSGPVVLFHSRFLELTRLQQKNKTPQLQEARDSVPTVEIKVEKSAVQEDRPLESPE
TVQAVMEPEIKPISPAEELIPEPRIPPTCAPQSVVKDFPPPEEKYLPLIPAPDICTPVLV
IKEEVKETELVVTTHHLLTEALPHSEPVQMAAPEPSYSVDKHSTSEGKCHITEEVKPLST
ETPCRRDSHDEFVSISEAELEPETTQEVPEASSPTEPSSIEKGKESPTVWRAEPEVETKP
MPIDNDTNDEAVSPQKEYKTKEIKNKKKQSPARVSPVDVVSTSCSEKPATRKSERIDKEK
LKRGSSPRAESRSTGKSPIHGSEPDMSEPGISASRARRRNVKSVYATPVEDDAPVRSGKE
SESPRSARKRGSDKDATQLQNIEQDPPAPIPATKRGRPPKNRRQGDESSTVKVEKSKMDN
KDTDSNESEGGERIPRGSKGKSSPHGTKSSLNPMPTVLGLGSTRKGQKTEGADDDQEMDL
TDEDSVALQDPSSSCKEEQTVKIDQKKEEKEEQGKELGRNKDVFHESKPNGKETNSQVLE
EKPTLEKDRIVRGKTKLTRTPKSPVLKNLKIRLNVTEVKDLLQLGDDEQEDSSKKLRPGD
QSDLVSKCTNANKVGSNDEKENATLEKQELLESPKSLISQLELEQALKNIAKLTDPASPT
EPPTLPVPLTEGKIEPEEEKPSNPASETELMAAIDSITADGTVLLTPAAPSRPDVASQPE
VQDLILPAKENEPESNVPALQEEPVLSATPKKGRPKRKVQKQVRKDSKEGPSISEESTIP
SADGPPSTVKTAPATIPSAATTGVITWKQEPEPLAAKVADVNTESESSSEEHMQHIKSVN
PQSKSQMGPKPQQVPADCISPSLSPLANRPNIRPIQTSRIPVSPPDWRHPSKDPGVSSSP
LMPLASKENQPLPSDSANVDIDHGTSDLRQILMKHKNISLPGSSSIPSNLPTLRDQNPPE
SNTQSAAVTNKSPLSGSVMAAHPAPPIVRAPASLQSPETKSVISVIASTATSVISRVCNP
PEPEDKGNVSIVNPCVDVTLPKQAYRPSKDDSGSYHVPSVGDGGGSAARFIVETLGTGSC
PGLRVNTSEGVVVLSHSGQKTEGPQRISAKISQIPQATAGDIESQPLVSIPQIKQQEMYG
HSHLGLQKGPSLQTDHGHPGKTQSTLSSIKQESTGLEKLESTYQSGPQGVVKRLSQGSQQ
VMSYHQEYMPIKHQKKIDSADPHSTDGAKPSWTSAISPAISPHLPSPPGNHVGFGTAPGD
RAPPHISGVKQEPRSPRKSGHPHTQFTKVSSPVGSSSPKGLPVMLSTGLPAMQQFITGVH
HAEQSVIMPTHNVPGGLGRMSPHRVNPSMPVGHLVQGDARVNTPPHSVMSYGMHSEPLAS
PWSGPMPPRPASPQAVGRDKVLKVNPGSLRGHDGEQEDARRFHQAAGRQSATQIKPEPMQ
PDPRGPMRSSVPLETYMSQREMRVLMHQQGERLATDSHSGHIQETLPSSAAPSSLPLSLS
PRAHVLPKGVSEKDITKNIEAKRAHSPLPKDGMMGIRQTGQAMASPQRVQLIAPGPSGSF
PEYTGMYSNSRSIHSQVPETSAVNQPPLNVPPTTGADPQTKPDGKLSQPVNMVQLLTKYP
IVWQGLLALKNDTAAVQLHFVCGNKALAHRSLPLQEGGALLRIVQRMRLEASQLESVARR
MTVRMPGLTPPPSPFYVSSRYNIPFTFLSLQGDSDFCLLLALPCGRDQDDVLSQTQALKA
AFINYLQAKLAAGIINIPNPGSNQPAYVLQIFPPCEFSESHLSQLAPDLLNRISSISPHL
MIVITSV
NT seq
9744 nt
NT seq
+upstream
nt +downstream
nt
atggttcgggaaaccagacacctttgggtgggaaatttacccgaacacgttcgagaggaa
aaaattgtggagcattttaaacggtatgggcgtgtggaaagtgtcaaagtcctgaggaag
cgagggtcagagggtggtgttgcagctttcgtggattttgtggatatcaaaagtgcgcag
aaggctcacaatgctgtcaacaagatgggggacagggaccttcggactgactacaatgaa
cctgggtcagtccctagtgctgttcggggccttgaagacggctccccctcgagcagtcga
gacgttacgggattcactaggggaacagttggtccagtgtttggcccacctgtttccctt
cacaccagagagggacgttatgaacggagaatagatggtagctcagaaagccgtgaacgt
gcgtatgaccacagcccatacggacaccatgagcgcagtggcactttcgaccgacagcgt
cactacaatgctgattattaccgcgatcgttccatgttcgctgccgctggcccggggagc
agcgccatcgctgggagcttcgaggcatcagacccccattttgactcgagaattcgagac
tcctttactctgactaattcttcacggcgtgacctataccgagatgaccgagggcggcgg
gtcgataggacctaccatcaccgccggagccggtcatctcattcctcacagtcacggcac
ccttccccacaacggaccacggggcaaacccccaaagctcctcattcccctaaaagagct
cctttgtcccccgggagaggtccacgatctcgatcccacagcagatcttcgagctctgac
tctgtcagcagcactagcagcactggcagcggcagtgattcaaacagcagctcaagcgat
ggatctcgggcccactctgtccagtcgtcagccacacacgcccctactcagtcttctatg
gggcttgactccgatgagccacgcaggagctttggaattaaggttcaaaacctaccagtg
cgctccacggacaccagtttaaaagacggacttttccatgaattcaagaagcatgggaaa
gtgacctcagtgcagatccacggagcttcagaagaccgctatggtttggtgttctttagg
caacaagaagatcaagagaaagccctcactgtttccaaaggaaagctgttctttggcatg
cttattgaagtcacagcctggaatggcccagaaacagagagtgaaaatgaattcaggccc
ttggatgggcggatagatgagttccacccaaaggccacacggacactgttcattggcaac
cttgagaagaccaccagttatcaacaactccttgacatttttcaacgcttcggcgaaatt
gtggacattgacatcaagaaagtaaatggagttccccagtatgcctttgttcagtattct
gatattgctagtgtctgcaaggccattaagaagatggacggagagtatctgggaagcaac
agactcaagcttgggtttggaaagagtatgcccactacgtgtgtctggctggatggttta
gcaaccagtgtgacagagcaatacctcacacggcatttctgccgttatggacatgtagtc
aaggttgtgtttgatagattgaaagggatggccctcatcttgtacaacaacacagatttt
gctcaggccgctgtgagggagaccaaaggttggaagattggtggcaataaaataaaggtg
gattttgcaagtcaggagagtcagatggcattctaccgatctatgcaggcatctggtcaa
gacattagagacttctatgaaattccaactgagcgacgagaggaacgcagacccccatac
catgaatttactgcagaaagggcttactatgagaatatacgaacccctggcatctaccca
gaggaagctagaagggactttgctgctcgcagcagagaacgttttcctgaactggaccac
tatcagggggatcactttgacccacgttatcatgaagacccaagggactacagggattac
agagacccctttgagcaagatatccgaaaatacacatatattcaaagggagcgagaaaga
gagcgagaacgttttgaggcggaccgcaggtggagcccttcccagccgaggcgacctggc
acccctacggtgtcgccttcaccatctgagcgcgctcccagagacccagaacgtcgggtt
tacagccagtcctccgagcgaagtggaagtgttagttccgtgtcaccaccacatttcgat
aaatctgaaaagaccttgccagaacttgctgcgaagagtgataagagcagccaaccagat
cgtgtagcaagtgctgagaaaactaaacgagtgaaacgaaaagagaaaggggacaaggat
aaagcggagaagattaaatcaaggaaagcaaaggggaaatctccatccaaccctccacct
gaaacagagattgatactggttttgagggagcgtctggaagaggaaggggatcagaccag
gatgctcttgagaaaccgaaaagtaaaggggatagtgaatctcctactgcaaatccattg
tcaactgttgacgctgtaaaaagtgaaaaatctgaaattagtaaaggtgagggttcagac
ttggatggaaaaaacagacccaagaaacatccaaagcctgatattggaaatgatggaaaa
gatatgtcagtggattctgatcgccttgctgcaagaaaaaggcgctttgctgattcaggt
ggtagaactattcgtcagaaaagaagcaggcacgaggaggaggaggatgtttttccctcc
gctgactttggtgccggtgcctcatgtatgaaggagtcggacactgacaaaagcaaagac
tcgcaacggagagattcaagacttaaagctgataaaagtggcactccgaaagatagccaa
gaggaccttggagggcaaagagagaagtctgagggatctttggaccctgtggactcaaaa
ggacatcctgggcacacttcatccagaaggttctcccatgaggggaccacagaacaaagc
gctacaagggagcaagaacaccctgctgctttcaaatttgctgcacagaatgccgaccct
gacaaaagtgttaaaaacaaggcagaccatgttgatattgacctctctcagagttgccgc
aagcaaatggagcaaaatagacgcttgcaccagcagcaacagcagcgtgagtccgacaaa
tcggacagaccaggaagtcctcaaggaagtgaaacggaggacttagaacatcgcagtctt
gtgcatgaagttggtaagccccctgaggatgtcacagataatttcccttctcacaaactg
aagaaactagacctatttgaaactgacccaggaattaagagggagcgtgtctacaggagc
ttcagacaaaagagcgaagatcctgagtggaacagcatttcctctccaggacatcagctc
ttttctcaccatgtagaagaagactttgtggacccttctcagaaagagttgtgtcgaaat
gaggaaaaggttcacccagatgtggagctgttagttaaaaggacacataatacgcctgct
aacaagccaaacactcctttacttagtgtggaagaagaacaacaaaagagatgggagagc
agagtcaaacaagaattgttgcccgacctgaatttttccagaagtctaactaagaatgtt
cacaatcgtaaacgtttggaatatggtatttggcacgacttggagcctggggaagtacga
tccgactctgaggaggaccgagagaacaaacccaactctcccatgccgtccacatccatg
ccttttaccgagaggccaagggttgacaggttttcagaccccaaacttgcacatcttgaa
aggaacaaattctactcctttgcacttgatcaaactatcacacctgatacaaaggctctg
cttgaacgggcaaagtctctttcctcttccagagaagataactggtcctttttggattat
gattctcactttgcaagtttacgcaacagaaaggatactgagaaagtagaatcggccccc
cgacctacaccttcctggtacatgaaaaagaaaaagatccgaagtggatctgaagacaaa
cttgatgacagaaaggaggaacctaagccagaggaacaggaacgcagggaactttttgcc
tcgcgcttccttcacagtcctgtctttgagctagactccaggcgacttcaacacttggaa
cgcaaacatgaagaacccgaatatgcacagaaccaacaccctggtcagcaagggacagta
gatggtgaacttgactcggggccagttgtccttttccatagtcgttttttggaactgaca
cgactgcaacaaaagaacaaaacccctcagctgcaagaggcaagagactcagtacccaca
gttgagattaaagtggagaaatcagctgttcaagaggaccgccctttagagtcgcctgaa
actgtgcaagctgtcatggagccagaaattaaacccattagtcctgctgaagagctgatc
cctgaacccagaatcccaccaacctgtgccccccaatcggtggtcaaggactttcctcca
ccagaagagaaatatcttccgttgatcccagcccccgatatatgtacccctgtgttagtc
ataaaggaagaggtgaaagaaactgagctcgtagtaacgacacaccacctgttaacggaa
gcactgcctcatagtgaacctgtacaaatggcagcacccgaacccagttattcagtggat
aaacattctacctctgaagggaaatgtcatattactgaggaggtaaaacctctctctact
gaaacgccatgccgtcgtgattctcatgatgagtttgttagcatttcagaagcagaattg
gagcctgagacaacacaagaagtgcctgaagccagtagtcccacagaacctagttctata
gagaaaggcaaagaaagtcccactgtttggagagcagagcctgaggtagaaacgaaacca
atgcccattgataatgacacaaatgacgaagccgtctcacctcagaaagagtataaaacg
aaagaaattaaaaataaaaagaaacaatcccctgctcgggtttctcctgttgatgttgta
tctacctcttgttctgagaagccagcaacacgcaagagtgagcgcattgacaaagagaag
ctgaaacgtggatcatcccctagagctgaatcaaggtccacgggcaaatcccctattcat
ggttccgaaccggatatgtcagagccgggcatatcggcgagcagagcacgacgaaggaat
gttaaatctgtgtatgccaccccagttgaagatgatgcgcctgttcgttctggaaaggaa
agtgagtcaccgcgctctgcgcgaaagcgaggttcagataaagatgcaacacaactacaa
aatattgaacaggatccacctgccccaattcctgcaactaaacggggccgcccccccaag
aatcgcagacaaggtgatgagagttcaacagttaaagtagaaaaatctaaaatggacaat
aaagacaccgattcaaatgaatccgaaggtggggaacgaattccaagagggtcaaaagga
aaatcgtcccctcatggcacaaaaagttcattgaatccgatgcccacggttttaggattg
ggatcaacaaggaaggggcaaaaaactgaaggggctgatgatgatcaggaaatggattta
acagatgaagattccgtggccttgcaagatccatcaagttcatgtaaagaagaacaaact
gtaaaaattgatcaaaagaaagaggagaaagaagaacaaggaaaagaattaggcagaaat
aaagatgtttttcatgaaagtaaacctaatgggaaagagacaaattcccaggtcttggaa
gagaaaccgaccttggaaaaagaccggattgttagaggaaaaacaaagttgactagaact
cccaagtctcctgttcttaagaacctcaaaatccgactaaatgtgacagaggtgaaagat
cttcttcagttgggagatgatgaacaagaagattcttcaaaaaagttgagaccgggtgac
caaagcgatcttgtttccaagtgtactaatgccaacaaagtaggttccaatgacgagaag
gaaaatgccactttggaaaaacaagagcttctggaatccccgaaaagcttaatttcacag
ctggaattggaacaggctctgaaaaatattgcaaaacttacggatccagcttctccaaca
gaaccaccaacgctgcctgtcccgcttacagaagggaaaattgagccagaagaagaaaaa
ccttccaatcccgctagcgagacggaactcatggctgctattgattccataactgctgac
ggaactgtattattgactccagcagctccatcaaggccagatgtagcttcacaacctgag
gtacaagacctgattttgccagctaaggaaaatgaacctgaatcaaatgtacctgcttta
caggaggagcctgtcttatctgctacacccaaaaagggaagaccaaaacgaaaagtccaa
aagcaagtaagaaaagattcaaaggaaggaccttcaataagtgaggaatcgacgattcct
tcggcagatggcccaccttccactgtaaagaccgctcctgcaacaattccatcagcagca
actactggggtcattacttggaagcaagaaccggagcctttggccgcaaaggtcgccgac
gtaaacaccgagtcagagtcatcttctgaggaacacatgcagcatattaaatctgttaac
ccccagtctaagagtcaaatgggcccaaagcctcaacaggttccagctgactgcatctcc
ccttccctgtcccccctagccaacaggccaaatatcagacccattcaaacgagtagaatt
cctgtttctcccccggattggcggcatccatctaaagatccaggagtctcctcttcacct
ctcatgccattggcgtccaaggaaaaccagcctttaccctccgactctgcaaacgtggat
attgatcatggcacaagtgacttgaggcagattcttatgaaacataaaaatatctccttg
ccaggcagtagttctattccaagtaaccttcccactctgcgtgatcaaaacccccctgaa
agtaatactcagtcagccgctgtgacgaataagtcccccctatcagggagtgtaatggct
gctcatccggctccacctattgttcgagctccagcctcattacaatctcctgagacaaag
tctgttatctcagttattgcgtccacggccacctctgtcatcagtcgtgtttgcaatcct
cccgagcctgaggacaagggaaacgtgagcattgtcaatccctgtgttgacgtgactctt
cccaaacaagcctataggcccagcaaagacgatagcggatcataccatgttccgtccgtt
ggtgatggaggtggaagtgctgcacgcttcatcgtcgaaacgctcggtacggggtcttgc
cctggtctgagagtaaatacgtctgaaggagtggtagtattaagccactcgggccagaag
actgaaggaccgcagaggatcagtgccaagataagtcagatcccacaagcaacagcaggt
gacatagaatctcagccgctggtgtccataccccagataaaacaacaggaaatgtatggt
cattctcatttaggacttcaaaaggggccctcactgcagacagaccatgggcatcccggt
aagacacagtcaactttgtcttccattaaacaagaaagcactggtttggaaaagctggaa
tcgacgtaccagtctggacctcaaggagtagtgaagcgtctctcacaaggtagccagcaa
gtaatgagttaccatcaagagtacatgccaataaaacatcaaaagaaaatagacagtgct
gatcctcacagcaccgatggagctaaaccttcttggacctcggccataagtcctgcaata
agcccccatttgccctctccgcccggcaaccacgtaggctttggcacagcgccgggtgac
cgagcgcccccccatatcagcggagtcaaacaggagccgcggtcccctcgcaagtcaggt
catccacacactcagtttactaaagtgtcctctcccgtgggctcctcgtcacccaagggc
ctaccagtgatgttatccactggtctccctgctatgcaacagttcattaccggcgtacat
cacgcggagcagtcagtcatcatgccgactcacaacgtgcccggaggcctgggacggatg
tctcctcaccgggtcaacccgtcgatgccagtggggcaccttgtccaaggagacgctcgg
gtcaatactccacctcactccgtgatgagctacgggatgcacagtgagcccctcgcctct
ccgtggtctggtcccatgccgccgcggcctgcctctccccaggctgttggcagggacaag
gttctcaaggtgaaccccggttctctgaggggccacgacggggagcaggaagacgcgaga
cgcttccaccaggctgccggaaggcaatctgcaacgcagataaaaccggagcctatgcag
cccgatcctcgcgggcctatgcggagtagtgtcccattggagacatacatgtcacaaaga
gagatgcgcgtcctcatgcaccaacagggagagcgtctggccactgactctcattctgga
cacattcaggagacccttccctcatctgctgcaccttccagcctgccgttgtccttgtct
ccaagagcacatgttttgccgaaaggtgtgtctgagaaggatataacaaagaatattgag
gcaaagagggcacactctcctcttcctaaggatggaatgatggggataagacaaactggg
caagcaatggcgtctccccaaagagttcagctaattgcaccaggacccagtggctcattc
ccagagtatactgggatgtactcaaactcaagaagcatccattctcaagtaccagagacg
tctgccgttaaccagccaccactgaacgtcccaccaaccacgggcgcagacccccagaca
aaaccagacggcaagctgtcgcagccggttaatatggtgcagctgctgacgaagtaccca
atcgtgtggcaaggcctgctggcattgaagaacgacacggctgcagtccagttacatttt
gtgtgcggtaacaaagctttggctcatcggtccctgccgcttcaggaaggaggcgcattg
cttcggatcgtccagagaatgaggctggaggcgtcacaactagagagcgtggcccgaaga
atgacggtacgtatgcctggtcttaccccccccccgagtcctttttatgtttcatcccgt
tataacatcccgtttacatttttgtccctacagggggacagtgatttctgtcttctcctc
gctttgccatgtggacgagatcaagatgatgtcctgagccaaactcaagctcttaaggcc
gctttcattaactacttgcaagcaaagttggctgctggtatcattaatatccccaaccca
ggttccaatcagcctgcctacgtgcttcagattttcccaccatgcgagttttcagagagc
catttatctcagctcgcccccgacctcctcaaccggatctccagcatctcaccacacctc
atgattgtcatcacctctgtgtaa
DBGET
integrated database retrieval system
