Gordonia alkanivorans: C5O27_11245
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Entry
C5O27_11245 CDS
T05876
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gav
Gordonia alkanivorans
Pathway
gav03030
DNA replication
gav03410
Base excision repair
gav03420
Nucleotide excision repair
gav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C5O27_11245
03410 Base excision repair
C5O27_11245
03420 Nucleotide excision repair
C5O27_11245
03430 Mismatch repair
C5O27_11245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gav03032
]
C5O27_11245
03400 DNA repair and recombination proteins [BR:
gav03400
]
C5O27_11245
Enzymes [BR:
gav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C5O27_11245
DNA replication proteins [BR:
gav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C5O27_11245
DNA repair and recombination proteins [BR:
gav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C5O27_11245
NER (nucleotide excision repair)
GGR (global genome repair) factors
C5O27_11245
MMR (mismatch excision repair)
DNA ligase
C5O27_11245
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C5O27_11245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
Zn_ribbon_TFIIB
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
AZZ81575
LinkDB
All DBs
Position
2492439..2494523
Genome browser
AA seq
694 aa
AA seq
DB search
MAETTESGAIEQSGPEADLREEWAALAEEIRDHQFRYYVKDAPVITDGEFDELLRRLQDL
EERHPELATPDSPTKLVGGGFSTAFSPVDHLERMMSLDNVFDYEEMTSWVERVNSDAGVE
AEFLCELKIDGVALALVYRNGVLERGVTRGDGRTGEDVSLNARTIEDIPQRLTASDEYPI
PDVLEVRGEVFFRGEDFEALNASLVADGKPPFANPRNSAAGSLRQKNPQVTARRKLRMIC
HGIGHTEGWRPESLHDAYLALGAWGLPVSTHTTKASGAAEILEKISYWGEHRHDVEHEID
GIVVKVDDFTLQRRLGSTSRAPRWAIAYKYPPEEATTKLRDIQVGVGRTGRVTPFAVLEP
VLVAGSTVSRATLHNGSEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGSEVEFEMP
ERCPECGTPLRPEKESDVDVRCPNQESCPAQLRERLFHLAGRGSFDIEALGYEAATALLS
AKVIRNEGDLFSITADDLARTDLFTTKAGALSANGKRLLANLDKAKDVALWRVLVGLSIR
HVGPTAARALATEFGSLEAIESADVEQLADVEGLGMTLAQSIHDWFTVDWHREIVEKWRA
AGVSMEDERDESIARTLEGKTIVVTGSLVDFSRDGAKEAILQRGGKASGSVSKKTDYVVV
GDSPGSKADKAEQLGVPVLDEDAFKRLLETGSPE
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaaacaacggagtcgggggccatcgagcagtcgggacccgaggcagacctgcgc
gaggagtgggcggctctcgccgaggagatccgcgaccatcagttccgttactacgtgaag
gatgcgccggtcatcaccgacggcgagttcgacgagctgctgcgccgcctgcaggatctc
gaggagcgccatcccgagctcgccacccccgattcgccgaccaagctcgtcggcggtggt
ttctcgaccgcattctccccggtcgaccatctcgagcggatgatgtcgctggacaacgtc
ttcgactacgaggagatgacctcctgggtcgagcgggtcaactccgacgccggcgtcgag
gccgagttcctctgcgaactcaagatcgacggggtcgcgttggcgctggtgtatcgcaac
ggtgtcttggaacgcggcgtcacccgcggcgacgggcgcaccggcgaggacgtctccctc
aacgcccgcaccatcgaggacatcccgcagcgcctcacggcctccgacgagtacccgatc
ccggacgtcctcgaggtgcgcggcgaggtcttcttccggggggaggatttcgaggcgctc
aacgcgtccctggtggccgacggcaagccgccgttcgccaatcctcgcaattcggcggcc
ggttcgctgcgtcagaagaacccgcaggtcacggctcgtcgcaaactgcggatgatctgt
cacggtatcggtcacaccgagggctggcggccggagtcgctgcatgatgcgtatctcgcg
ctcggtgcatggggactgccggtgtcgacgcacaccaccaaggcttcgggcgctgccgag
atcctcgagaagatctcctactggggcgagcaccgtcacgacgtcgagcacgagatcgac
ggcatcgtggtcaaggtcgacgacttcaccctgcagcgccgcctcggttccacctcgcgt
gcaccgcgatgggcgatcgcctacaagtacccgccggaggaggccaccaccaagctgcgc
gacatccaggtcggcgtcggacgcaccggtcgcgtcacaccgttcgcggtgctcgaaccg
gtcctcgtcgccggctcgaccgtctcccgggccaccctgcacaacggctcggaggtcaag
cgcaagggcgtcctcatcggcgacaccgtgaccattcgcaaggccggcgacgtgatcccc
gaggtcctcggaccggtcgtcgacctgcgcgacggctccgaggtcgagttcgagatgccc
gagcgctgcccggaatgcggtacgccgctacgtccggagaaggaatccgacgtcgacgtc
cggtgcccgaatcaggagagttgcccggcacagttgcgggagcggctctttcacctcgcc
gggcgcggctccttcgacatcgaggcgctcggctacgaggcggcgaccgcgctgctgtcg
gccaaggtgatccgcaacgaaggagacctgttctccatcaccgccgacgatctcgcccgc
accgatctgttcacgacgaaggccggcgcgctgtcggcgaacggaaaacgtttgctggcc
aacctcgacaaggccaaggacgtcgcgctgtggcgggtgctggtgggtctgtcgatccgc
catgtcggtcccactgccgcgcgcgcgctggccaccgagttcggctcgctggaggccatc
gaatccgccgacgtcgaacaactggccgacgtcgagggcctcggcatgaccctcgcacaa
tcgatccacgactggttcaccgtcgactggcatcgcgagatcgtcgagaagtggcgtgcg
gcaggcgtttccatggaggacgagcgtgacgagtcgatcgcgcgaacgctcgagggcaag
accatcgtcgtgaccggatcgctggtggacttctcccgtgacggcgccaaagaggcgatc
ctgcagcgcgggggcaaggcgtcgggttcggtgtcgaagaagaccgactacgtggtcgtc
ggcgattcgccgggaagcaaggccgacaaggccgaacagctcggcgtcccggtactcgac
gaggacgcgttcaagcgactgctggagaccggcagtcctgagtag
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