Gimesia algae: Pan161_32570
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Entry
Pan161_32570 CDS
T09989
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gax
Gimesia algae
Pathway
gax03030
DNA replication
gax03410
Base excision repair
gax03420
Nucleotide excision repair
gax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pan161_32570 (ligA)
03410 Base excision repair
Pan161_32570 (ligA)
03420 Nucleotide excision repair
Pan161_32570 (ligA)
03430 Mismatch repair
Pan161_32570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gax03032
]
Pan161_32570 (ligA)
03400 DNA repair and recombination proteins [BR:
gax03400
]
Pan161_32570 (ligA)
Enzymes [BR:
gax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pan161_32570 (ligA)
DNA replication proteins [BR:
gax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pan161_32570 (ligA)
DNA repair and recombination proteins [BR:
gax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pan161_32570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pan161_32570 (ligA)
MMR (mismatch excision repair)
DNA ligase
Pan161_32570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pan161_32570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Bap31_Bap29_C
BRCT_2
V-SNARE_C
Motif
Other DBs
NCBI-ProteinID:
QDT91596
UniProt:
A0A517VF33
LinkDB
All DBs
Position
complement(4218961..4220973)
Genome browser
AA seq
670 aa
AA seq
DB search
MSVRTEIEDLRKQLEHHNRLYYLDAKPEITDREYDRLMKRLEQLETEHPEFDSPESPSKK
VGGAPIEGFQTVAHRLPMLSIDNIFELEGLTEFETRICKLLGEEQVELTAEYKIDGVAVS
LIYEEGRLLQGLTRGDGQQGDDITHNVRTIWGVPLRLETENPPELLEVRGEAYISNSDFQ
ALNVEMQAQGKEPFANPRNTTAGGLKLLDPKLCAKRKIRFFAHGIGAMAGVNYQTHVNYL
AAIQEMGIPATPDVKAFPNLNATLEQVQTMMDDLHTLDFEVDGIVLKVNRFDQREELGNT
SKSPRWVVAYKWERYEAVTRAESIVFQVGKTGTVTPVANLEPVTIAGTTVSRASLHNRDE
MERLGIQIGDWVVVEKAGKIIPHVVRVEEHRRDGSQQELEFPTHCPECDTLLIQDEGGVY
IRCPNPNCPAMLRETLRYYASRQAMDIEGMGIKMVEQLIEQRLLNGLADIYRLHDHYGDL
VSLERQGEKSIENLLAGIENSKTQPLWRLLTGLNIRHVGSSNARILEKQFGTIDEIAQQS
VEELAAVDEIGPVIAESVYTFFHSDFGTKLINDLKSEGLNMGSPVEKTAETSGILDGKTL
VVTGTLTQFTRDEAKELIRKHGGKASGSVSSKTDYLVAGEKAGSKLTKAEELNVTILTET
EFLELLGESE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttcgaaccgagattgaagatcttcgtaagcaactcgagcatcataatcggctg
tattatctcgatgcgaaaccggagatcaccgaccgtgaatacgaccggttaatgaagcgg
ctggaacaactcgaaacagaacatcccgagtttgattctccagagagtcccagcaaaaaa
gtagggggcgctccaattgagggctttcagacagtcgcccaccgcttaccgatgttgtcc
atcgataatatttttgagctcgaaggcctgactgaatttgaaacccgaatctgcaaactg
ctgggggaagaacaggttgaactcaccgccgagtacaaaatagatggagttgccgtttct
ctgatttatgaagaggggcggctgcttcaaggactgacgcgaggagatggccagcagggg
gatgacatcacgcacaacgtgcggaccatctggggggtgccgctacggcttgagacagag
aatcccccggaactgctggaggtcaggggagaagcatatatcagcaattctgattttcag
gcgttgaatgttgaaatgcaggcacaagggaaggaaccgttcgcgaacccgcggaataca
accgccgggggattgaagctcctggatcccaagttgtgtgccaaacgtaagattcgtttt
tttgcccacggcatcggggcgatggctggcgttaactatcagacacacgtcaattacctg
gctgccattcaggagatgggaattcctgcgacaccggatgtgaaagcgtttcccaatctg
aatgcgacgctggaacaggtccagacgatgatggatgacctgcatacactggattttgaa
gtcgatggcattgttctgaaggtcaatcgatttgatcagcgggaagaattgggaaatact
tccaaaagtccgcgctgggtggtggcctataaatgggaacgctacgaagcggtcaccaga
gccgaatcgattgtgtttcaggtggggaaaacaggaacggtaactcctgtcgctaacctg
gaaccggtgaccattgcggggaccacggtatcccgggcgagtctgcataatcgggatgaa
atggaacgcttgggaattcagatcggcgactgggtggttgtagagaaagcgggtaaaatt
atcccacatgtcgtccgggtggaagaacatcgccgcgatggaagtcagcaggaactggag
tttccgacgcattgtccggaatgtgataccttgctgatccaagatgaaggaggcgtgtat
atccgctgtcccaatcccaactgtcctgccatgctgcgggaaaccctgcgatattatgcc
tcccgtcaggcaatggacattgaaggtatgggcatcaagatggtggaacaactgatcgag
cagaggctgctgaatggcctggcagacatctatcgtttacatgatcattatggcgacctg
gtgtcgctggaacgccaaggtgaaaagtccatcgaaaatctgctggcgggaattgaaaat
tcaaaaacgcaacctctctggcgactgctgacaggtctgaatatcagacatgtgggttcg
agcaatgcccggattctggagaaacagttcggcacaatcgatgaaattgctcaacagagc
gttgaagaactggcggccgtcgatgaaatcggccccgtgatagccgaatcggtttatact
tttttccactcggatttcggtacgaagctgatcaatgacctgaagtcggaaggactgaat
atggggagtcccgtcgaaaaaacggcggagacttcaggaatccttgatggaaaaactctg
gttgtgacgggcactttgacgcaattcacacgggatgaagcaaaagaactgatccgcaaa
catggcggcaaagcttccggaagtgtttcttccaaaacggactatctggttgcaggtgag
aaggcgggcagtaaactcacaaaagcggaagagttgaacgtaaccatcttaacagaaacc
gaatttctggaactgctgggtgagtcagaataa
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integrated database retrieval system
