Gemmatirosa kalamazoonensis: J421_2714
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Entry
J421_2714 CDS
T03025
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gba
Gemmatirosa kalamazoonensis
Pathway
gba03030
DNA replication
gba03410
Base excision repair
gba03420
Nucleotide excision repair
gba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J421_2714
03410 Base excision repair
J421_2714
03420 Nucleotide excision repair
J421_2714
03430 Mismatch repair
J421_2714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gba03032
]
J421_2714
03400 DNA repair and recombination proteins [BR:
gba03400
]
J421_2714
Enzymes [BR:
gba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J421_2714
DNA replication proteins [BR:
gba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J421_2714
DNA repair and recombination proteins [BR:
gba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J421_2714
NER (nucleotide excision repair)
GGR (global genome repair) factors
J421_2714
MMR (mismatch excision repair)
DNA ligase
J421_2714
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J421_2714
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
UPF0758_N
Trm112p
PGRL1_N
Motif
Other DBs
NCBI-ProteinID:
AHG90251
UniProt:
W0RHL1
LinkDB
All DBs
Position
complement(3166556..3168610)
Genome browser
AA seq
684 aa
AA seq
DB search
MPTRNEEEELAALAARAGTLREQIEQASYEYYVLDRPTLSDAEYDRLFRELQTLEREHPE
LRTEDSPTLRVGAEPQSVLPKHTHLVPMLSLGNAFSDEELAEWEERIVRLAGDEVRHAGY
TAELKIDGAAVSLTYRDGVLATGATRGNGTVGEDVTPNLRTIREIPLRLRGKVPAGVLEI
RGEVYMTYTGFEKMNAERVAAGEPVFANPRNSAAGALRQLDPKMTAKRPLRFFGYAVAVP
EGARALPFASQWELLETLASWGIPVAPHRRRCVTLDDVHAWAHDVEQVQRATLDFAIDGA
VVKVDSLALQGELGDVGREPRWAIARKFAPDIAETTLLDIKVNVGRTGSVNPYAELEAVE
IGGATVRLATLHNFELIREKDLRPGDRVQVKRAGEVIPQVIGPVPDKRDATHPPAPYEPP
THCPACGTPLEPGEDRGMLYCRNFHCPARQLEGLVHFASRGAMDIRGLSYARIQQLLEAG
LVHDAADLYDLTVEQLVALERFAEKSAENLVQALAESRAQPLSRLLFGLGIDFVGEVAAR
LLARHFGTMDRLLNASVDDVLEVRGVGETMARSVVDWFADPEARQLVARLAERGLTMHEP
SAAAGTALKGCTVVITGTLPTLTREQATELVEAHGGRVTSSVSRKTSFLLAGADAGSKLT
KATEYGVEIIDEAELLRRVEAGSE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgccgacccggaacgaggaggaggaactcgccgcgctggccgcgcgcgcgggcacgttg
cgcgagcagatcgagcaggcgtcgtacgagtactacgtgctcgatcggcccacgctctcc
gacgccgagtacgaccggctgttccgcgagctgcagacgctcgagcgcgagcacccggag
ctgcgcaccgaggactcgccgacgctgcgcgtgggcgccgagccgcagtccgtgctcccg
aagcacacgcacctcgtgccgatgctgtcgctcggcaacgcgttcagcgacgaggagctc
gcggagtgggaggagcgcatcgtgcgactcgccggcgacgaggtgcgacacgccggctac
acggcggagctgaagatcgacggcgcggcggtgagcctcacgtatcgcgacggggtgctg
gcgaccggcgcgacgcgcggcaacggcaccgtgggcgaggacgtcacgccgaacctgcgc
acgatccgcgagatcccgctgcggctgcgcggcaaggtgccggccggcgtgctcgagatc
cgcggcgaggtgtacatgacgtacaccggcttcgagaagatgaacgccgagcgcgtggcg
gccggcgagccggtgttcgcgaacccgcgcaactccgccgccggggcgctgcgtcagctc
gacccgaagatgacggcgaagcgtccgctccgcttcttcggctacgcggtggcggtgccg
gagggcgcgcgcgcgctgccgttcgcgtcgcagtgggagctgctggagacgctcgcgtcg
tggggcattcccgtggcgccgcaccgccgccgctgcgtcacgctcgacgacgtgcacgcg
tgggcgcacgacgtggagcaggtgcagcgcgcgacgctcgacttcgcgatcgacggcgcg
gtggtgaaggtcgactcgctcgcgctgcagggcgagctcggcgacgtggggcgcgagccg
cggtgggccatcgcgcgcaagttcgcgcccgacatcgcggagacgacgctgctcgacatc
aaggtcaacgtcggccgcacgggcagcgtgaacccgtacgcggagctggaggcggtggag
atcggcggcgcgaccgttaggctcgcgacgctgcacaacttcgagctgattcgcgagaag
gacttgcgccccggggaccgcgtgcaggtgaagcgcgccggcgaggtgatcccgcaggtc
atcgggccggtgccggacaagcgcgacgcgacgcatccgccggcgccgtacgagccgccg
acgcactgccccgcgtgcggcacgccgctcgagcccggggaggaccgcggcatgctctac
tgccgcaacttccactgccccgcgcggcagctcgaggggctcgtgcacttcgcgtcgcgc
ggcgcgatggacatccgcggcctgtcgtacgcacgcatccagcagctgctcgaggcgggg
ctcgtgcacgacgcggcggacctgtacgacctcacggtggagcagctcgtggcgctcgag
cggttcgccgagaagagcgcggagaacctcgtgcaggcgctcgccgagtcgcgcgcgcag
ccgctgtcgcgcctcctgttcgggttaggcatcgacttcgtgggcgaggtggcggcgcga
ctgctcgcgcggcacttcggcaccatggaccggctcctgaacgcgtccgtggacgacgtg
ctcgaggtgcgcggcgtcggcgagacgatggcgcgctcggtggtggactggttcgcggac
ccggaggcgcgacagctcgtcgcgcggctcgccgagcgcggactcacgatgcacgagccg
tcggccgcggcggggacggcgctgaagggctgcaccgtcgtcatcaccggcacgctgccg
acgctgacgcgcgagcaggcgacggagctcgtggaggcgcacggtggacgcgtgacgagc
tccgtgtcgcgcaagacgagcttcctgctcgccggcgccgacgcgggcagcaagctcacg
aaggccacggagtacggcgtggagatcatcgacgaggcggagctgctgcgccgcgtggag
gcgggatccgaatga
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