Candidatus Giovannonibacteria bacterium NC_groundwater_467_Ag_B-0.1um_47_26: HYW15_01260
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Entry
HYW15_01260 CDS
T10159
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gbg Candidatus Giovannonibacteria bacterium NC_groundwater_467_Ag_B-0.1um_47_26
Pathway
gbg03030
DNA replication
gbg03410
Base excision repair
gbg03420
Nucleotide excision repair
gbg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gbg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYW15_01260 (ligA)
03410 Base excision repair
HYW15_01260 (ligA)
03420 Nucleotide excision repair
HYW15_01260 (ligA)
03430 Mismatch repair
HYW15_01260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbg03032
]
HYW15_01260 (ligA)
03400 DNA repair and recombination proteins [BR:
gbg03400
]
HYW15_01260 (ligA)
Enzymes [BR:
gbg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYW15_01260 (ligA)
DNA replication proteins [BR:
gbg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYW15_01260 (ligA)
DNA repair and recombination proteins [BR:
gbg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYW15_01260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYW15_01260 (ligA)
MMR (mismatch excision repair)
DNA ligase
HYW15_01260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYW15_01260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
5_3_exonuc
DUF2116
Bep_C_terminal
Scaffolding_pro
Nlig-Ia
BRCT_2
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QQG42821
UniProt:
A0A7T5REV0
LinkDB
All DBs
Position
181333..183321
Genome browser
AA seq
662 aa
AA seq
DB search
MTKSEAKERIEKLKKLIDKYRYQYHVLNKLEISEEALDSLKHELKKMEDEFPDLVTPDSP
TQRVAGKPLKEFKKIRHQTKMLSLEDVFSEEEFSEWLARIKKLAPQGKFSFYAEPKFDGL
ALSIVYENGILKYAATRGDGETGEDVTQNVRTIESVPLSVEGNGRNGRVEVRGEALITKK
NFEAINKEQKKKGGQIYANSRNLAAGSLRQLDPKITASRRLDFFSYDLLGMDFRSHSEEH
KSLRELGFKTGEDLEKRCEDAEEVFRHYKKIAERREKLAYNIDGLVVSVDSNKLYKKLGV
VGKTPRGAIAFKFSPREATTKVEDIVVQVGRTGALTPVAVLKPVEIGGVMVSRATLHNED
EIKRLGLKIGDSVVVGRAGDVIPDVRKVLKELRTGHEKEFHMPKHCPVCKKPIEKKEREV
QAKCVNKLCPARHRENLYHFVSRKAFNIDGLGPKILDAFLDNGLIQDAADIFELKEGDIA
PLERFGEKSAENIVLAIKNSRKIPLARFLYALGILHVGEETAIDLAEHFGSLDKLAEASK
ENLESVPNVGGVMAESVYGWFREERNKNFLKKLLRCVDIENSKKKKLGKLAGKIFVFTGE
MESMSRDEAKAKVRELGGDPSETVSKNTDYVVAGSNPGSKYDKAKKLGVKIIDEKDFLKM
IR
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatccgaggccaaggaaagaatagaaaaattaaaaaagctgatagataagtat
cgctatcagtatcatgttttaaataaactggaaatttcagaggaggcgctggattcgctc
aagcacgaactgaaaaaaatggaagacgaatttccggatttggtgacccctgactcgccg
acgcaacgggttgccggaaagccgcttaaagaatttaaaaaaatcaggcatcagaccaaa
atgctgtccttggaggatgttttttccgaagaagaattttcggagtggctcgcgagaata
aaaaaattggctccgcagggtaaattttcgttttacgcggagccgaaatttgacggcctt
gctttaagcatcgtttatgaaaatgggattttaaaatacgccgctacgcgcggagacggc
gaaaccggagaagatgtcacccaaaacgtgcgtacgattgaatccgtccccctgagcgtt
gaggggaatgggagaaatgggagagtggaagtgcgcggagaagcgctcatcaccaagaaa
aattttgaggcaatcaataaagagcaaaaaaagaaaggcgggcagatttacgccaactcc
agaaatttggcggccgggtctttgcggcaattagacccgaaaatcaccgcgtcgcgccgg
ctggattttttttcatacgatcttttggggatggattttcggagtcatagcgaagagcat
aaatccttacgcgagctcggttttaaaaccggcgaggatttggagaagcgctgcgaggac
gcggaggaggttttcaggcactataaaaaaatcgcggagaggcgcgaaaagctagcgtat
aatatagacggccttgtggtcagcgttgattccaacaaactttataaaaaactgggagtt
gtgggcaagacgccgcgcggggcgattgcttttaaattttccccaagagaggcgacgacg
aaagttgaagacattgttgtgcaggttgggcgcaccggcgctcttacgccggtcgcggtt
ttaaagccggttgaaattggcggcgtgatggtaagccgcgcgacgcttcataatgaagac
gaaattaaaagattgggattaaaaatcggcgatagcgtggttgtcggacgcgccggggat
gtcattccggacgtcagaaaagttttgaaagaattgcgcaccgggcatgaaaaagaattc
catatgcccaagcattgcccggtatgcaaaaagccaattgaaaaaaaagaaagggaagtg
caggccaaatgcgtcaataaactttgcccagcccggcatagggaaaatctttatcatttt
gtgtcaagaaaagcgtttaatattgacggcttaggtccaaaaattctggacgcctttttg
gataatggccttatacaagatgctgcggacatttttgaactaaaagaaggagatatcgcg
cctcttgaaagattcggagaaaagtccgcggaaaatattgtcttggcgataaaaaattcg
cggaaaattccgttggcccgctttctttacgcgcttggcattttgcacgttggcgaggag
acggcgattgatttggcggagcattttggaagtttggataaattggcggaggcctcaaaa
gaaaatctggagtcagtcccgaatgtcggaggagtgatggcggagagcgtttacgggtgg
tttcgtgaagaaagaaataaaaattttttaaaaaaacttttgcgttgcgttgatattgaa
aattcaaaaaagaaaaaactgggcaagctcgccggaaaaatttttgttttcaccggtgag
atggaatcaatgagccgggatgaagccaaggcaaaagtgcgcgagctcggcggcgaccca
tcggagacagttagcaaaaacactgattatgtcgtcgctggctcaaaccctggctcgaaa
tacgacaaagccaaaaagctgggagttaaaataatagacgaaaaagattttttaaagatg
attagataa
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