Immundisolibacter cernigliae: PG2T_01560
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Entry
PG2T_01560 CDS
T04454
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gbi
Immundisolibacter cernigliae
Pathway
gbi03030
DNA replication
gbi03410
Base excision repair
gbi03420
Nucleotide excision repair
gbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PG2T_01560 (ligA)
03410 Base excision repair
PG2T_01560 (ligA)
03420 Nucleotide excision repair
PG2T_01560 (ligA)
03430 Mismatch repair
PG2T_01560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbi03032
]
PG2T_01560 (ligA)
03400 DNA repair and recombination proteins [BR:
gbi03400
]
PG2T_01560 (ligA)
Enzymes [BR:
gbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PG2T_01560 (ligA)
DNA replication proteins [BR:
gbi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PG2T_01560 (ligA)
DNA repair and recombination proteins [BR:
gbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PG2T_01560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PG2T_01560 (ligA)
MMR (mismatch excision repair)
DNA ligase
PG2T_01560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PG2T_01560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_2
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ANX03004
UniProt:
A0A1B1YQE7
LinkDB
All DBs
Position
complement(322175..324283)
Genome browser
AA seq
702 aa
AA seq
DB search
MDQAGASARIEALRREIAEHDYRYYVLDEPSIPDAEYDRLMRELLALEAQYPTLMTADSP
SQRVGGAPLAAFAQVTHAVPMLSLANAFDDSEVHDFDRRVRELTGETVVDYHAEPKFDGL
AISLLYRDGLLVQAATRGDGSTGEDVTANVRTIAAIPLRLRGHPPPLLEARGEVFMPRDG
FARLNAEQTARGEKPFVNPRNAAAGSLRQLDPQITARRPLRFYCYGYGRFEGQLPARHSE
RLDLLHGFGLPVCPQRSRVTGIEACLAYYAQLGRLRPGLPYDIDGVVYKVDRIDLQERLG
FVSRAPRWALAHKFPAQEAVTVLENIEVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNE
DELRRKDLRIGDSVVVRRAGDVIPEVVRALPQRRPADAQPFVMPTHCPVCGSDIVRLDGE
AVSRCSGRLHCPAQLKAGIAHFAGRRAMDIDGLGDKLIEQLVDRGLVHDVADLYHLDAPT
LASLERMAELSASKLVAAIEASKRTTLSRFIFALGIPLIGEEVARLLSAEFGTLDTLLTQ
DWAALHERKQAIATANQKARKHNADHPDRAPLPVQELPLRGIGTEITDSLAEFIADARNL
DVIRRLRAAGIRFQDDGAAPRAADAAAQPLAGKTFVITGTFSQPREALTEAFVRLGAKVT
GSVSKNTDFVAVGENPGSKADRAVQLGVAILDEAGLMALLGQ
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggccggggcgagcgcccgcatcgaggcgctgcggcgcgaaatcgccgagcac
gactaccgctactacgtgctggacgagccaagcattccggacgccgagtacgaccggctg
atgcgcgagctgctggcgctggaggcgcagtatccgacgctgatgacggccgattcgccg
agccaacgcgtcggtggggcgcccttggccgcgtttgcacaggtgacgcacgccgtgccc
atgctgtcgctggccaatgccttcgacgacagcgaggtgcacgatttcgaccgccgggtg
cgcgagctgaccggcgagacagtcgtggactaccacgccgagcccaagttcgacggcctg
gccatcagcctgctgtaccgcgatggcctattggtgcaggcggccacccgcggcgatggc
agcaccggcgaggatgtgaccgccaacgtgcgcaccatcgccgccatcccgctgcgcctg
cgcggccatccgccgccgctgctggaagcccgcggcgaggtgttcatgccgcgcgatggc
ttcgcgcgtttgaacgccgaacagacggcgcgcggcgagaagcccttcgtcaatccgcgc
aatgccgccgccggcagcctgcgccagcttgatccgcagatcaccgcccggcggccgctg
cgcttctactgctatggctacggccgtttcgagggccagctgccggcgcggcacagcgag
cggctggacctgctgcacggctttggcctgccggtgtgcccgcagcggtcgcgggtcacc
ggcatcgaggcgtgcctggcctattacgcacagcttggccgtctgcggccgggcctgccg
tacgacatcgacggcgtggtctacaaggtggaccgcatcgatctgcaggagcgcctgggg
ttcgtgtcgcgcgcaccgcgctgggcgctggcgcacaagttcccggcccaggaggcggtg
accgtgctcgagaacatcgaggtgcagatcggtcgcaccggcgccgtgacgccggtggcg
cgcctgcagccggtgttcgtcggcggcgtcacggtgaccaacgcgacgctgcacaacgag
gacgagctgcggcgcaaggatctgcgcatcggcgacagcgtggtggtgcgccgggccggc
gacgtgattccggaagtggtgcgggcgctgccgcagcgccggccggcggatgcccagccg
ttcgtcatgcccacgcactgcccggtgtgtggctccgacatcgtgcgtctggacggcgag
gcggtttcgcgctgcagcggcaggctgcactgcccggcgcagctgaaggccggcatcgcc
catttcgccggacggcgggcgatggacatcgatggcctgggcgacaagctgatcgagcag
ctcgtcgaccgtggcctggtgcacgacgtggccgatctttatcacctcgacgcgccgacc
ctggccagcctcgagcgcatggccgagctgtcggcgagcaagctggtggcggccatcgag
gccagcaagcgcaccacgctgtcgcgcttcatcttcgcgctcggcatcccgctgatcggc
gaggaggtggcacgtttgctcagcgccgagttcggcacgctcgacactctgctgacgcag
gactgggcggcgctgcatgagcgcaaacaggccatcgccacggccaatcagaaggcccgc
aagcacaatgccgatcaccccgatcgtgcgccgctgccggtgcaggaattgcccctgcgc
ggcatcggcacggagatcaccgacagcctggccgagttcatcgccgatgcccgcaacctg
gatgtcatccgccgcctgcgggcagccggcatcagatttcaggacgacggcgccgcgccg
cgcgcggccgatgccgccgcgcagccgctggccggcaagactttcgtcatcaccggcacc
ttctcgcagccgcgcgaggcgcttaccgaagcgtttgtgcgcctgggcgcgaaggtcacc
ggcagcgtgtcgaaaaataccgatttcgtcgccgtgggcgagaatccgggcagcaaggcc
gacagggcggtgcagctgggggtcgcgatcctggacgaggccggcctgatggcgctgctt
ggacaatga
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