Citrifermentans bemidjiense: Gbem_1336
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Entry
Gbem_1336 CDS
T00749
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gbm
Citrifermentans bemidjiense
Pathway
gbm03030
DNA replication
gbm03410
Base excision repair
gbm03420
Nucleotide excision repair
gbm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Gbem_1336 (ligA)
03410 Base excision repair
Gbem_1336 (ligA)
03420 Nucleotide excision repair
Gbem_1336 (ligA)
03430 Mismatch repair
Gbem_1336 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbm03032
]
Gbem_1336 (ligA)
03400 DNA repair and recombination proteins [BR:
gbm03400
]
Gbem_1336 (ligA)
Enzymes [BR:
gbm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Gbem_1336 (ligA)
DNA replication proteins [BR:
gbm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Gbem_1336 (ligA)
DNA repair and recombination proteins [BR:
gbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Gbem_1336 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gbem_1336 (ligA)
MMR (mismatch excision repair)
DNA ligase
Gbem_1336 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Gbem_1336 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ACH38355
UniProt:
B5EIJ0
LinkDB
All DBs
Position
complement(1539236..1541242)
Genome browser
AA seq
668 aa
AA seq
DB search
MDKTAAAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASYPDLALPDSP
TGRVGGRPVAKFTQVRHTTPMLSLENAFTEKDIVDFDDRMKRFLGLSGAEEIGYVCEPKM
DGVAVELVYRDGLLAIGSTRGDGLVGEEVTQNLKTIKDIPLRLQTEEPPGLLTVRGEVYL
PLEPFRKFNQEREEAGEPPFANPRNAAAGSLRQLDSKITAKRPLSIFCYAPGEVDGVAFQ
SQSDFLSTIPTWRIPVNPLTRLVPGVQGVLDYYNEMMEKRDDLPYEIDGVVVKVDRFSLQ
RDLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVSRAT
LHNWEEMERKDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLPVPQACPVCGGEVVR
IPGEVAVRCVGLNCPAQALERVKHFAARRAMDIDGLGEKFIEQLLNLKLIRNVADIYRLT
EEDFMQFERMGKKLAENLLNSIAASKERELSRLIFALGIRHVGEHTAKLLASAFGSMENL
AAASEEELTSIREVGPQVAASIADFFKSEENLEVLRELKEHGVNPRVEEKRVGGRFTGKT
FVFTGALEKFTRDEAKKMVELEGGHAAGSVSKKTDYVVAGADAGSKLDKAQQLGVRVLSE
DDFLELMQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataaaactgctgcggctcaaaggatcaagtggttaagctcggagatcgagcgccac
aaccggctctactacgaacaggacatgccggagataaccgatgccgagtacgatgcgctc
ttccgcgagttgaaggagcttgaggcctcctatcccgacctcgccctccccgattccccg
accggccgggtcggcgggcgcccggtggcgaagttcacccaggtgcgccacacaacgccc
atgctttcgctggaaaacgccttcacggagaaggacatcgtcgacttcgatgaccggatg
aagcgcttcctggggctttcaggcgcagaggagatcggttatgtttgcgagccgaagatg
gacggcgtcgcggtggagttggtgtaccgtgatgggctcctcgccatcggctctacccgc
ggcgacgggttggtgggcgaggaggtgacccagaacctgaagaccatcaaggacataccg
ttgcggctgcagacggaggagcctccggggctcttgacggtgcggggtgaggtgtacctg
ccgctggaacctttcaggaagttcaaccaggagcgcgaggaagcgggggagccacccttc
gccaacccgaggaacgccgcggcaggatccctgcgccagctcgactcgaagatcaccgca
aagcggccgctcagcatcttctgctacgcccctggcgaggtggacggagtcgccttccaa
tcgcaaagcgatttcctcagcaccatccccacctggcgcatcccggtcaacccgctgacg
aggctcgtcccgggcgtgcagggggtgctcgactactacaacgagatgatggaaaagcgc
gacgatctcccctacgagatcgacggcgtggtagtgaaggtggatcggttttccctgcag
cgcgacttgggagagaagagccgctcgccgcgctgggccatcgcctggaagttccccccg
cgccaggcgaccacggtggtcaacgacatcgtgccccaggtgggtcggaccggcgtcatc
acccctgtggcgcaccttgagccggtgaacgtctcgggcgtcatggtctcccgcgccaca
ctgcacaactgggaggagatggagcgcaaggacatccgcaggggcgataccgtagtggtc
gagcgcgccggcgacgtcattcccgccgtggtgcaggtgctggtcgagaaaaggcaaggg
agcgagacgctgcttccggtaccgcaggcgtgtcctgtgtgcggcggcgaagtggtcagg
ataccgggcgaggtcgccgtgcgctgcgtcggcctcaactgtcccgcgcaggcattggaa
cgggtgaagcactttgccgcccgccgcgccatggacatagacgggctgggggagaagttc
atcgagcagcttctgaacctgaagctgatacggaacgtcgccgacatctaccggctgact
gaagaggacttcatgcagttcgagcgcatggggaagaagctggcggagaaccttctgaat
tccatcgccgccagcaaggagcgggagctttcgcgcctgatcttcgcgctcgggatacgg
cacgtgggggagcacaccgcgaagcttttggccagcgccttcgggagcatggagaatctc
gcggcggcgagcgaagaggagttgacctccatccgcgaagtcgggccgcaggtggcggct
agcatcgcggatttcttcaagagcgaagagaacctggaagtgctcagggagttaaaggag
cacggggttaatcccagggtggaagagaagcgggttggcggcaggttcaccggcaagacc
ttcgtcttcaccggcgccctggagaagttcacgcgcgacgaggcgaagaagatggtggag
ttggagggggggcatgcagccggctccgtgtccaagaagaccgactacgtcgtcgccggc
gccgatgccgggagcaagctggataaagcgcagcagctgggcgtgcgggtgttgagcgag
gatgattttctggagttgatgcagtag
DBGET
integrated database retrieval system
