Citrifermentans bremense: GEOBRER4_27900
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Entry
GEOBRER4_27900 CDS
T07006
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gbn
Citrifermentans bremense
Pathway
gbn03030
DNA replication
gbn03410
Base excision repair
gbn03420
Nucleotide excision repair
gbn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GEOBRER4_27900 (ligA)
03410 Base excision repair
GEOBRER4_27900 (ligA)
03420 Nucleotide excision repair
GEOBRER4_27900 (ligA)
03430 Mismatch repair
GEOBRER4_27900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbn03032
]
GEOBRER4_27900 (ligA)
03400 DNA repair and recombination proteins [BR:
gbn03400
]
GEOBRER4_27900 (ligA)
Enzymes [BR:
gbn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GEOBRER4_27900 (ligA)
DNA replication proteins [BR:
gbn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GEOBRER4_27900 (ligA)
DNA repair and recombination proteins [BR:
gbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GEOBRER4_27900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GEOBRER4_27900 (ligA)
MMR (mismatch excision repair)
DNA ligase
GEOBRER4_27900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GEOBRER4_27900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
BCG48040
UniProt:
A0A6S6M347
LinkDB
All DBs
Position
3237021..3239078
Genome browser
AA seq
685 aa
AA seq
DB search
MGRPHSKEIKDRKRFTEMDKTAAAERIKWLASEIERHNRLYYEQDMPEITDAEYDALFRE
LKELEASYPDLALPDSPTGRVGGRPVAKFAQVRHTTPMLSLENAFSEQDIVEFDDRVKRF
LGLSSTAEIGYVCEPKMDGVAVELVYRDGLLAIGSTRGDGLVGEEVTQNLKTIKDIPLRL
QTEEPPELLTVRGEVYLPLEPFRKFNQEREEAGEPPFANPRNAAAGSLRQLDSKITAKRP
LSIFCYAPGEVDGVAFESQSHFLGTIPAWRIPVNPLTRLVPGVQGVLDYYHEMMEQRDDL
PYEIDGVVVKVDQFSLQRDLGEKSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPV
AHLEPVNVSGVMVSRATLHNWEEMERKDIRRGDTVVVERAGDVIPAVVQVLVEKRQGRET
LLPVPEACPVCGGEVVRIPGEVAVRCVGLNCPAQLLERVKHFAARRAMDIDGLGEKFIEQ
LLNLKLIRNVADIYRLTEDDFMQFERMGKKLAENLLNSIAASKERELSRLIFALGVRHVG
EHTAKLLASAFGSLENLAAASEEELTSIREVGPQVAASIADFFKSEENLEVLRELKEHGV
NPKAEEKRVGGRFTGKTFVFTGALEKFTRDEAKKRVELEGGHAAGSVSKKTDYVVAGAEA
GSKLEKAQQLGVRVLSEDEFLELMR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgcccgcacagcaaagagatcaaagaccgaaagaggttcacggaaatggataaa
actgccgcagctgaaaggatcaagtggcttgcttccgagatcgagcgccacaaccggctc
tactacgaacaggacatgccggagataaccgatgccgagtacgatgcgctcttccgcgag
ctgaaggaacttgaagcctcctatcccgacctcgccctccccgattcgccgaccggcagg
gtaggcggacgcccggtggccaaattcgcccaggtgcgccacacaactccgatgctctcg
ctggagaacgctttctcggagcaggacatcgtcgaattcgacgacagggtgaaacgcttc
ctggggctttccagcacagcagaaatcggatatgtctgcgagccgaagatggacggagtc
gcagtggagctggtgtaccgggacggtctcttggccatcggctccacccgcggcgacggg
ctggtgggcgaggaggtgacccagaacctgaaaaccatcaaggacataccgcttagactg
cagacggaagagcctccggaactcttgacggttcggggcgaggtatacctgccgctggaa
cctttccgcaagttcaaccaggagcgcgaggaggcgggggagccccccttcgccaacccg
aggaacgcggcggcagggtccctgcgccaactcgactcgaagatcaccgcgaagcggccg
ctcagcattttctgctacgccccgggcgaggtggacggagtagcctttgaatcgcagagc
catttcctcggcaccatacccgcctggcgcataccggtgaacccgctgacccgcctcgtc
ccgggcgtccagggggtgctcgattactaccacgagatgatggagcaacgagacgacctc
ccctacgagatcgacggggttgtggtgaaggtggaccagttctccctgcagcgcgacctg
ggagagaagagccgttctccgcgctgggccatcgcctggaagttccctccgcgccaggcg
accacggtggtcaacgacatcgtcccccaggtgggacgtaccggcgtcatcacgcctgtc
gcgcaccttgagccggtgaacgtctctggcgtgatggtgtcccgcgcaacgctgcacaac
tgggaggagatggagcgcaaggacatccgcaggggcgacaccgtagtcgtggagcgcgcc
ggagacgtcattcccgccgtggtgcaggtgctggtcgagaaaaggcagggacgcgagacc
ctgctcccggtgccggaagcatgtcctgtctgcggcggcgaggtggtcaggatcccgggc
gaggtggcagtgcgctgcgtcggcctcaactgtcccgctcagctgttggagcgtgtgaag
cattttgccgcccgccgcgccatggacatagacgggctgggggagaagttcatcgagcag
cttctgaacctcaagctgatacggaacgtcgccgacatctaccggctgacggaagacgac
ttcatgcagttcgagcgcatggggaagaagctggccgagaacctgttgaattcgatcgct
gcaagcaaggagcgggagctttcccgtctgatcttcgcgctcggggtacggcacgtcggg
gagcacactgcgaagcttttagccagcgccttcgggagcctcgaaaacctggcggcggca
agcgaggaggagttgacctccatccgcgaagtcggcccccaggtggcggcgagcatcgcg
gatttcttcaagagcgaggaaaacctggaggtgctcagggagttgaaggagcacggggtg
aatcccaaggcggaagagaagcgggtgggcggcaggttcaccggtaagaccttcgtcttc
accggcgcactggagaagttcacccgcgacgaggcgaagaagagggtggaattggagggg
gggcatgccgctggctccgtgtccaagaagaccgactacgtcgtcgccggcgccgaagcc
gggagcaaactcgagaaggcgcagcagttgggcgtgcgggtgttgagcgaggatgaattt
ctggagttgatgcggtag
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