Gordonia bronchialis: Gbro_3250
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Entry
Gbro_3250 CDS
T01102
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gbr
Gordonia bronchialis
Pathway
gbr03030
DNA replication
gbr03410
Base excision repair
gbr03420
Nucleotide excision repair
gbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Gbro_3250
03410 Base excision repair
Gbro_3250
03420 Nucleotide excision repair
Gbro_3250
03430 Mismatch repair
Gbro_3250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbr03032
]
Gbro_3250
03400 DNA repair and recombination proteins [BR:
gbr03400
]
Gbro_3250
Enzymes [BR:
gbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Gbro_3250
DNA replication proteins [BR:
gbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Gbro_3250
DNA repair and recombination proteins [BR:
gbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Gbro_3250
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gbro_3250
MMR (mismatch excision repair)
DNA ligase
Gbro_3250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Gbro_3250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_TFIIB
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ACY22455
UniProt:
D0LCW2
LinkDB
All DBs
Position
complement(3479267..3481342)
Genome browser
AA seq
691 aa
AA seq
DB search
MADSSEHQDISADLREQWSTLADEIREHQFRYYVKDSPVITDGEFDALLRRLQDLEDAHP
ELAAPDSPTKLVGGGFSTAFTPVDHLERMMSLDNVFDYDEMRTWVERVNADAGTSVEFLC
ELKIDGVALALVYEKGVLVRGVTRGDGRTGEDVTLNARTIDDVPQRLTASDEYPIPDVLE
VRGEVFFRVEDFEALNASLVADGKAPFANPRNSAAGSLRQKNPQITARRRLRMICHGIGH
TEGWRPASLHDAYLALGAWGLPVSTHTTKVPGADEILEKIGYWGEHRHDVEHEIDGIVVK
ADDVSVQRRLGATSRAPRWAIAYKYPPEEATTELLDIQVGVGRTGRVTPFAVLAPVLVAG
STVSRATLHNESEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGTERAFVMPDRCPE
CGAPLRPEKDSDVDIRCPNQETCPAQLRERLFHLAGRGSFDIEALGYEAATALLNAKVIT
NEGDLFSLTADDLARTDLFTTKAGALSANGKRLLANLENAKQVPLWRVLVGLSIRHVGPT
AARALATEFGSLNAIEDADVEQLAGVEGLGMTLAQSIHDWFAVDWHREIVEKWRAAGVSM
EDERDDSIVRTLEGKTIVVTGSLEDFSRDGAKEAILQRGGKASGSVSKKTDYVVIGESPG
SKAAKAEQLGVPVLDEDAFKRLLETGDPGID
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtggcagacagctccgagcaccaggacatcagcgccgacctccgcgaacagtggtcgacg
ctcgccgacgagatccgcgagcaccaattccgctactacgtgaaggattcgccggtcatc
accgacggcgagttcgacgccctgctgcgccgcctgcaggacctcgaggacgctcatccg
gagttggcggcgcccgattcgcccaccaaactcgtcggcggcggattctccaccgcattc
accccggtcgaccatctcgagcgaatgatgtcgctggacaacgtcttcgactacgacgag
atgcgcacctgggtcgagcgggtgaacgccgacgcggggacatcggtggagttcctgtgc
gagctgaagatcgacggcgtggcgctggccctggtctacgagaaaggtgtgctggtgcgc
ggtgtcacccgtggtgacggccgcaccggcgaggacgtcaccctcaacgcccggaccatc
gacgatgtgccacaacgtctcacggcctccgacgagtacccgatccccgacgtgctggag
gtgcgcggcgaggtcttcttccgggtcgaggacttcgaggcactcaacgcgtccctcgtc
gccgacggcaaggcgccgttcgcgaatccgcgcaactccgcggcggggtcgttgcggcag
aagaatccgcagatcaccgcccggcgccgattgcggatgatctgccacggcatcggccac
accgagggctggcgcccggcgtcactgcacgatgcctacctggcactgggcgcctggggt
ctgccggtgtccacgcacacgaccaaggtgcctggtgccgatgagatcctcgagaagatc
gggtactggggcgaacaccgccacgacgtcgaacacgagatcgacggcatcgtggtgaag
gccgacgacgtcagcgtgcaacgacgattgggcgccacctcgcgcgcgccgcggtgggcc
atcgcctacaaatacccgccggaggaggcgaccaccgaactcctcgacatccaggtcggc
gtcgggcgcaccggacgggtcaccccgttcgccgtactcgcgccggtcctcgtcgccggc
tcgacggtctcgcgcgccactctgcacaacgagtccgaggtgaaacgtaagggggtgctg
atcggtgacaccgtgaccattcgcaaagccggcgacgtcatccccgaggtcctcggaccg
gtcgtcgaccttcgcgacggcaccgaacgcgcgttcgtgatgccggacagatgcccggaa
tgcggtgcgccccttcggccggagaaggacagcgacgtcgacatccgttgtcccaatcag
gaaacctgtcccgcgcagttgcgggagcggttgttccatctcgcgggccgcggctccttc
gacatcgaggcactgggctatgaggcggcgaccgcgctgctgaatgcgaaggtcatcacc
aatgagggcgacctgttctcgctgaccgccgacgacctcgcgcgcaccgacctgttcacc
accaaggcaggcgcgttgtcggccaacggtaaacggctgctggcgaacctggagaacgcg
aagcaggtgccgttgtggcgggtgctggtggggttgtcgatccgtcacgtcgggccgacc
gccgcgcgggcactggccaccgaattcggttcgctgaatgcgatcgaagacgccgacgtg
gagcaactcgccggggtcgagggactcggcatgaccctcgcgcagagcatccacgactgg
tttgccgtcgactggcaccgggagatcgtcgagaagtggcgtgccgccggggtttccatg
gaggacgagcgtgacgattcgatcgtgcggaccctggagggcaagactatcgtcgtcacc
ggttctctcgaggacttctctcgggacggcgccaaggaggcgatcctgcagcgcggcgga
aaggcctcgggctcggtgtcgaagaagaccgattatgtggtgatcggtgagtcgccaggc
agcaaagcggccaaggccgagcaactcggggtgcccgttctcgacgaagacgcgttcaag
agactgctcgagaccggtgatcccggtatcgactga
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