Gymnogyps californianus (California condor): 127016366
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Entry
127016366 CDS
T08687
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl04115
p53 signaling pathway
gcl04145
Phagosome
gcl04148
Efferocytosis
gcl04350
TGF-beta signaling pathway
gcl04510
Focal adhesion
gcl04512
ECM-receptor interaction
gcl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
127016366
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127016366
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127016366
04148 Efferocytosis
127016366
09143 Cell growth and death
04115 p53 signaling pathway
127016366
09144 Cellular community - eukaryotes
04510 Focal adhesion
127016366
09142 Cell motility
04820 Cytoskeleton in muscle cells
127016366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gcl04131
]
127016366
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gcl00536
]
127016366
Membrane trafficking [BR:
gcl04131
]
Endocytosis
Phagocytosis
Opsonins
127016366
Glycosaminoglycan binding proteins [BR:
gcl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127016366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
TSP1_ADAMTS
Laminin_G_3
TSP1_CCN
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
127016366
NCBI-ProteinID:
XP_050752752
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All DBs
Position
5:complement(35131160..35147333)
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AA seq
1176 aa
AA seq
DB search
MGPTTVLFLLLMLGVSEAKRTAESRSDDNSVFDLFELIGFIRKGAGRRAPGVHLVKGPES
SSPAYRIEDASRIPAVPDSKFQDLLDAIHAEKGFILLATLRQAKKSRGTLLSVERKDGSG
HVFSLVSNGKAGTLDLSLSGDGKQQLVSVEDALLATGHWKNITLFVQEDRAQLYVGCEKM
ENAELDIPIQNIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCSS
STSAIITLDNPINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMVTTLQ
DRVRKVTEENELIAKVVQITPGVCIHNGILHKNKEEWTIDSCTECTCQNSATICRKVSCP
LMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRCE
GSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSPVPQLNGKPC
EGEARENKSCQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVGE
ATGTQVCNKQDCPIDGCLSNPCFAGTTCTSSPDGSWKCGACPAGYHGDGVHCQDIDECKE
VPDACFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRSVEDAMANKQVCKPRNPCTDGT
HDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCK
KDNCPNLPNSGQEDYDKDGIGDACDNDDDDDGIPDDRDNCAFIYNPQQYDYDRDDVGDRC
DNCPYNHNPDQTDTDNNGEGDACAVDIDGDGVLNEMDNCQYVYNVDQRDTDLDGVGDQCD
NCPLEHNPDQEDTDSDRIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDAC
DHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDSVPDIDDICPENVDISE
TDFRRFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFFI
NTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPGE
HLRNALWHTGNTSGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMAD
SGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDP
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggggccaacgactgttctcttcctcctcctcatgctcggcgtctcggaggccaagcgc
actgcagagtccaggagtgatgataacagtgtcttcgatctctttgaactcattggcttc
attcggaagggagccgggcgccgggcacccggggtgcacctggtgaagggaccagaatct
tccagccctgcttaccgcattgaagacgccagtcgcatccctgctgtccctgactccaag
ttccaagacttattagatgccatccatgctgagaagggcttcatcctcctggccactctc
cggcaagccaagaagagtagaggcacactgctgtctgtggaacggaaagatggctctggt
catgtcttcagtctagtatcaaatggcaaggcaggcaccctggacctgagcctttctggt
gatggcaagcagcaattagtgtcagtagaggatgccttgctggctacaggacattggaag
aatatcaccctgtttgtgcaggaggaccgggctcagctctatgtggggtgtgagaaaatg
gagaacgctgaactggacatccccatccagaacatcttcactagggacctggccagcagt
gccaggctccgtattgccaaagggggagttaatgacaacttccagggactgctgcagaat
gtgcggtttgtgtttggaacaactctggaaactatcctgaggaacaaaggctgctccagc
tccactagtgcaatcattactttggacaacccgatcaatggttccagcccagctatccgc
actaattacattggccataaaacaaaggacatccaagcagtctgtgggttttcctgtgat
gaactaacaaatatgtttgtggaactgcaagggctccggtccatggttacaacacttcaa
gacagagttcgcaaagtgactgaagaaaatgaactcattgctaaagtcgtccagatcact
cctggagtatgcattcataatggaatcttgcacaaaaataaagaagagtggactattgac
agctgcactgaatgtacctgccagaactctgccactatatgccggaaagtgtcctgtcct
ctcatgccttgttccaacgccactgtgcctgatggggagtgctgcccgcgatgctggcct
agcgactacgcagatgatggatggtctccttggtctgaatggacttcatgttctgtgacc
tgtgggaatgggattcagcagagagggcgatcctgtgacagtctcaataaccgctgtgaa
gggtcttctgtacagactcggacttgccaccttcaggagtgcgataagagatttaaacag
gatggtggctggagtcactggtcaccatggtcatcatgttctgtcacttgtggcacgggc
atcatcactagaattcgtctctgcaactctccagtaccacagctgaatggcaaaccttgt
gagggtgaggcaagagaaaacaaatcctgccagaaagatccttgcccaattaatggcaac
tggggaccatggtctccatgggacgcttgcacagtgacatgtggaggaggacttcaaaaa
cgtagccgtctctgcaataatcctgagcctcagtatggtgggaagacttgcgtaggtgaa
gctacagggactcaggtgtgcaacaaacaggactgtccaattgatgggtgtctgtctaat
ccctgctttgcggggactacatgtaccagctcccctgatggttcctggaagtgtggtgcc
tgtcctgctggctaccatggtgatggtgtccactgccaagatattgatgagtgcaaagag
gttcctgatgcctgctttgtcttcaatggagtgcacaggtgtgagaatactgaacctggg
tacaactgtctgccttgtccaccacgtttcactgggacacagccatttggtcgcagtgtc
gaggacgccatggctaacaaacaggtctgcaagccacgtaatccatgcacagatggaaca
catgactgcaacaagaatgccaaatgcaattaccttggccacttcagtgaccccatgtat
cgctgtgaatgtaaaccaggctatgctggcaatggcataatctgtggagaagatactgac
ttggatggatggccaaatgagaaccttgtttgtgttgccaatgccacttaccactgtaaa
aaagataactgccctaatctgcccaactctgggcaggaagactatgataaggatgggatt
ggtgatgcttgtgacaatgatgatgatgatgatggtattcctgatgaccgggacaactgt
gcattcatctacaacccacagcagtatgactatgacagggatgatgttggtgaccgctgt
gataactgcccctacaatcacaaccctgatcaaactgacactgacaacaacggagaagga
gatgcatgtgcagtggatattgatggagatggggtgcttaatgaaatggacaactgccaa
tatgtctacaatgtagaccagagggatacagacttggatggtgttggagatcagtgtgac
aactgtccactggaacacaatcctgaccaggaagacactgattctgaccgcataggtgat
cagtgtgacaacaatcaggacatagatgaagatggccatcaaaataatcttgataactgc
ccctatgtgcccaatgccaatcaagctgaccatgacaaggatggaaaaggtgatgcctgt
gaccatgatgatgacaacgatggtatccctgatgacaaagataactgcagactggttgcc
aacccagatcaagctgattctgatggtgatggacgtggagatgcttgcaaagatgacttt
gaccaagacagtgtgccagacattgatgatatctgccctgaaaatgtggacattagtgag
actgacttccgaagatttcagatgattcccctggatcccaaaggaacatcccaaaatgat
ccaaactgggttgttcgtcaccagggtaaagaactggttcagacagtcaactgtgaccct
ggccttgcagtcggttttgatgaattcaatgctgtggacttcagtggcaccttcttcatc
aatacagaaagggatgatgattatgctggctttgtatttggctaccaatctagcagtcgt
ttctatgttgtcatgtggaagcagatcacccagtcttactgggactccacaccaaccaaa
gctcaaggctactcaggtctctccatcaaagttgtgaattccaccactggtccaggagaa
caccttcgtaatgctctgtggcacacaggaaacacttctggccaggtgagaactctgtgg
catgaccctcgtcacataggctggaaagacttcactgcatacagatggcgtctcagccat
agaccaaagactggttacatcagggttgtaatgtatgaagggaagaaaatcatggcagac
tcaggaccaatctatgacaaaacctatgctggtggtcggctaggattatttgtcttctct
caagaaatggtgttcttctcagatcttaaatatgaatgcagagatccgtaa
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