Gluconacetobacter diazotrophicus PA1 5 (JGI): Gdia_3160
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Entry
Gdia_3160 CDS
T00798
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gdj
Gluconacetobacter diazotrophicus PA1 5 (JGI)
Pathway
gdj03030
DNA replication
gdj03410
Base excision repair
gdj03420
Nucleotide excision repair
gdj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Gdia_3160
03410 Base excision repair
Gdia_3160
03420 Nucleotide excision repair
Gdia_3160
03430 Mismatch repair
Gdia_3160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gdj03032
]
Gdia_3160
03400 DNA repair and recombination proteins [BR:
gdj03400
]
Gdia_3160
Enzymes [BR:
gdj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Gdia_3160
DNA replication proteins [BR:
gdj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Gdia_3160
DNA repair and recombination proteins [BR:
gdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Gdia_3160
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gdia_3160
MMR (mismatch excision repair)
DNA ligase
Gdia_3160
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Gdia_3160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Nlig-Ia
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ACI52890
UniProt:
A9H0L6
LinkDB
All DBs
Position
complement(3457965..3460091)
Genome browser
AA seq
708 aa
AA seq
DB search
MSRAHDPAPDLARLDPSELTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQ
RNLAIEARFPDLRRADSPSLHVSGAPSAAFGRHRHLVPMLSLDNVFGREDFESFVTRAAR
FLGLNDDQARALRFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANLRTLRDVP
LRLKGPAPALIEIRGEVFLSKPAFLSINAAQAEAGQKPFANPRNAAAGSLRQLDPNITAR
RPLSLFAYAQGFSSDRVADTHWDYLERLRQWGFTVNPLSCVVESAEAAEAFMDRIARERS
GLEYDIDGVVYKVDDLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRINIQVGRTGALT
PVAILEPVNVGGVIVTRATLHNEDEIARKDVRVGDLVQIQRAGDVIPQILGVVPPGADAP
PRGEAFIFPHTCPICGARAERPPGEVVWRCTGGLTCPAQVVERLIHFVSRDAFDIDGLGE
RTITEFHADGLLKTPADIFRLPDHEADIATREGWGTVSARNLTASVRARQTIPLARFIYA
LGIRRIGTSNARLLARHYGSYTHWREQMLRATTIGSDERLALGSITGIGGAIADELAAFF
MEAHNLETLDDLTAMLTAIEDEDLPAQGHLSGKTVVFTGTLTTMTRPEAKAIAERLGARV
TDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEEGWRELAGIGPVGP
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcgcacacgatcccgcccccgatctcgccaggctggacccgtccgaactgacc
gaaccccaggccatggtggaactggagcgtctggcccagcagatccgcgccctggaccgc
gcctattacgaggacgacgcccccaccgtcaccgacgccgaatatgacgcgctacgccag
cgcaacctggcgatcgaggcccgcttccccgatctgcgccgcgcggacagcccttcgctg
cacgtcagcggcgcgccctccgccgcgttcggccggcatcgccacctggtgccgatgctc
tcgctggacaacgtgttcggccgcgaggatttcgaatccttcgtgacccgcgccgcccgc
ttcctcggcctgaacgacgatcaggcccgcgccctgcgcttcgtcgcggaacccaagatc
gacggcctgtcgatcagcctgacctacgagcacggccgcttcgtgcgcggcaccacgcgc
ggcgacgggacggagggcgaggacgtcaccgccaacctgcgcacgctgcgcgacgtgccg
ctgcggctgaagggcccggcccccgcgctgatcgaaatcaggggcgaggtcttcctgtcc
aagcccgccttcctgtcgatcaacgccgcccaggccgaagccggacagaaacccttcgcc
aatccgcgcaatgcggcggcggggtcgctgcgccagctcgatcccaacatcaccgcccgc
cggccgctgtcgctgttcgcctatgcccaggggttttcgtcggaccgggtggccgacacc
cactgggattatctggagcggctgcggcagtggggattcacggtcaatccactgtcctgc
gtcgtcgaaagcgccgaggcggcggaagcgttcatggatcgcatcgcccgcgaacgctcg
gggctggaatacgatatcgacggcgtggtctataaggtcgacgacctggccctgcaggac
cggctgggcttcgtcggccgggcgccgcgctgggcgatcgcgtggaagttccccgccgaa
caggccatcacccgcctgacccggatcaacatccaggtcggccgcacgggcgcgctgacc
ccggtggcgatcctggaaccggtcaatgtcggcggcgtcatcgtcacccgtgcgacgttg
cacaacgaggacgagatcgcccgcaaggacgtccgcgtcggcgacctggtccagatccag
cgcgcgggcgacgtcattccgcagatcctgggcgtggtgccgcccggcgcggatgccccg
ccgcgcggcgaggcgttcatcttcccccacacctgcccgatctgcggcgcccgcgccgag
cggccgccgggcgaggtggtgtggcgctgtaccggcggcctgacctgcccggcgcaggtc
gtcgaacggctgatccatttcgtctcgcgcgacgcgttcgacatcgacgggctgggcgaa
cgcacgatcaccgaattccatgccgacgggctgctgaagaccccggccgacatcttccgc
ctgccggaccacgaggccgacatcgcgacgcgcgagggctggggcacggtctcggcccgc
aacctgaccgcgtcggtccgcgcccgccagaccatcccgctggcgcgcttcatctacgcg
ctgggcatccgccgcatcggcaccagcaatgcacgcctgctggcccggcattacggatcg
tacacgcattggcgcgaacagatgctgcgcgccaccaccatcgggtccgacgaacggctg
gcgctgggctcgatcaccgggatcggcggcgccatcgcggacgaactggccgccttcttc
atggaggcgcacaatctggaaaccctggacgacctgacggcgatgctgacggcgatcgag
gacgaggacctgccggcccagggccatctgtcgggcaagaccgtcgtcttcaccggcaca
ctgacgaccatgacccggcccgaggccaaggccatcgccgaacggctgggcgcccgcgtc
accgacagcgtctcgaagaagaccgatctggtggtgctgggcgccgatgcgggctccaag
gcccgcaaggccgccgaactgggaatcgacacgctggatgaggaaggctggcgcgaactg
gccggtatcggccctgtcggtccgtaa
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