Geobacillus sp. 12AMOR1: GARCT_00336
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Entry
GARCT_00336 CDS
T03966
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gea
Geobacillus sp. 12AMOR1
Pathway
gea03030
DNA replication
gea03410
Base excision repair
gea03420
Nucleotide excision repair
gea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GARCT_00336 (ligA)
03410 Base excision repair
GARCT_00336 (ligA)
03420 Nucleotide excision repair
GARCT_00336 (ligA)
03430 Mismatch repair
GARCT_00336 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gea03032
]
GARCT_00336 (ligA)
03400 DNA repair and recombination proteins [BR:
gea03400
]
GARCT_00336 (ligA)
Enzymes [BR:
gea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GARCT_00336 (ligA)
DNA replication proteins [BR:
gea03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GARCT_00336 (ligA)
DNA repair and recombination proteins [BR:
gea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GARCT_00336 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GARCT_00336 (ligA)
MMR (mismatch excision repair)
DNA ligase
GARCT_00336 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GARCT_00336 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_3
HHH_8
DUF3701
Motif
Other DBs
NCBI-ProteinID:
AKM17667
LinkDB
All DBs
Position
322330..324342
Genome browser
AA seq
670 aa
AA seq
DB search
MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSP
TQRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVRQEVGEAAYVCELKIDGLAV
SVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPVSLEARGEAFMPKASFLRL
NEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGIASHSEALDY
LQALGFKVNPERRRCANIDEVIAFISEWHDKRSQLPYEIDGIVIKVDSFAQQRALGATAK
SPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIR
EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAMPTHCPECESELVRLEGEVALR
CLNPNCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVRDVADLYCLTKEQLIGLE
RMGEKSAANLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLERATKEEL
MAVPEIGEKMADAITAFFAQPEATELLQELRAYGVNMAYKGPKRSAEAPADSAFAGKTVV
LTGKLASMSRNEAKEQIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESR
FLQEINRGKR
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaccgccaacaagccgaacggcgcgcggccgagctgcgcgaactgttgaaccgctac
gggtacgaatattatgtgcttgaccgcccgtctgttccagatgccgagtatgaccggttg
atgcaagagctcatcgccattgaggaacaatatccggagctcaaaacgagcgattcgccg
acccagcgtatcggcggtccgccccttgaggcgtttcgcaaagtggcgcatcgcgttccg
atgatgagcttggcgaacgcgtttggcgaaggagacttgcgcgattttgaccgccgcgtc
cgtcaggaagtcggggaagcggcgtacgtatgcgagctgaaaatcgacggcctcgccgtc
tcggtccgctatgaagacggctatttcgtccaaggggcgacgcgcggcgacgggacgacg
ggtgaagacattacggaaaatttgaaaacgatccgctcgctgcctctccgtctgaaagaa
ccggtgtcgcttgaagcgcgcggcgaggcgtttatgccgaaagcgtcgtttttgcgcttg
aatgaggagcgaaaagcccgcggcgaggagctgtttgccaacccgcgcaacgccgcggct
ggctcgctccgccagctcgacccgaaagtggcggcctcgcgccagctggatttgtttgta
tatggcttagccgacgccgaggcgctcggcatcgcttcacacagcgaagcgcttgattat
ttgcaggcgctcgggtttaaagtaaacccagagcgacggcgctgcgccaatatcgatgag
gtgatcgcctttatcagcgagtggcacgacaagcggtcgcagctgccgtatgagattgac
ggcatcgttattaaggtggactcattcgcccagcaacgggcgcttggcgcgacggcgaaa
agcccgcgctgggcgattgcctacaagttcccagccgaggaagtggtgacgacgttaatc
ggcattgaggtgaacgtcggccgcacgggtgtcgtcacgccgacggcgattttagagccg
gtgcgcgtcgccggcacgaccgtgcagcgcgccacccttcacaatgaagattttatacgg
gaaaaagacattcgcatcggcgatgcggtcatcattaaaaaagcgggcgacatcatcccg
gaagtggtcggcgtcgtcgttgaccggcgcgatggggatgaaacgccgtttgcgatgccg
acgcactgcccggaatgcgaaagcgagctcgtccgtctcgagggggaagtggcgctccgc
tgcttgaacccgaactgcccggcccagctgcgcgagcggctcatccattttgcctcaagg
gcggcgatgaacatcgagggtttgggcgaaaaagtcgtcacccagctgtttaacgccggc
cttgtccgcgatgtcgccgatttgtactgcctgacgaaagaacagctcatcgggttggaa
cggatgggggaaaagtcggcggccaacttgcttgcggcgattgaggcgtcgaagcaaaac
tcgcttgaacggctgctgtttggccttggcattcgctacgtcggagcgaaagccgcccaa
cttttggctgagcattttgaaacgatggagcggctcgaacgggcgacgaaagaggagttg
atggccgtccccgaaatcggagagaaaatggcggatgcgatcacggcgttcttcgcccaa
cccgaagcaactgagctgctccaggagctgcgcgcttacggtgtcaatatggcttacaaa
gggccgaagcggtcggctgaagcgcctgctgactccgccttcgccggcaaaacggtcgtc
ttgaccggcaagctcgcgtcgatgtcgcgcaatgaagcaaaagaacaaattgaacggctt
ggcgggcgcgtcaccggcagcgtcagccgcagcaccgaccttgtcatcgccggcgaggat
gccggatcgaagctggagaaagcccagcagcttggcattgagatttgggacgaatcacga
tttttgcaagagatcaacagggggaaacgatga
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integrated database retrieval system
