Geobacter sp. 60473: GEO60473_19970
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Entry
GEO60473_19970 CDS
T10337
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gec Geobacter sp. 60473
Pathway
gec03030
DNA replication
gec03410
Base excision repair
gec03420
Nucleotide excision repair
gec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GEO60473_19970 (ligA)
03410 Base excision repair
GEO60473_19970 (ligA)
03420 Nucleotide excision repair
GEO60473_19970 (ligA)
03430 Mismatch repair
GEO60473_19970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gec03032
]
GEO60473_19970 (ligA)
03400 DNA repair and recombination proteins [BR:
gec03400
]
GEO60473_19970 (ligA)
Enzymes [BR:
gec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GEO60473_19970 (ligA)
DNA replication proteins [BR:
gec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GEO60473_19970 (ligA)
DNA repair and recombination proteins [BR:
gec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GEO60473_19970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GEO60473_19970 (ligA)
MMR (mismatch excision repair)
DNA ligase
GEO60473_19970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GEO60473_19970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
E1-E2_ATPase
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BET58957
LinkDB
All DBs
Position
2257816..2259828
Genome browser
AA seq
670 aa
AA seq
DB search
MDKQTAADRIAALRTELERHNRLYYVEDRPEITDAEYDLLFRELVDLETRFPDLDAPDSP
TQRVGGAPLDKFEQVTHRIPMLSLENAFTDAEIADFDDRVKRFLGLHGDVEIDYVCEPKM
DGLAVELVYERGVLTVGSTRGDGVVGENVTHNLKTVRDIPLRLRCEQPPELLEVRGEVYL
PLAPFQRLNAQREEEGEPPFANPRNAAAGSIRQLDSRITARRPLAIFCYAPGEVRGASFA
AQTEFLDRIGEWDLPVNPLIRPVKGVAEILAYYREMTERRDSLPYEIDGVVVKVDSFALQ
RELGEKSRSPRWAVAVKFPPRQAVTLVEDIVPSVGRTGVITPTAHLRPVEVSGVTVSRAT
LHNWEEMERKDIRIGDTVVIERAGDVIPAVVKVLAEKRSGSERPLPIPAACPECGSEVVK
IPGEVAVRCMGLSCPAQIRESIIHFASRDAMDMEGLGEKYIEQLLRLGLVKNVADLYTLT
RDRFMQFERMGDKLAENLLNAIEASKQRELSRFIFALGIRHVGERTAKLLAGAFGSIENL
ERATEEELLSIREVGPQVARSIITFFRNEGNRETVRRMIEVGVRPTVEEKKVGGRFTGKT
FVFTGALTRFSRPEAQKMVEKEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVRVLTE
DEFLAMLEEG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcagaccgcagcggaccgcatcgcagccctccgcaccgaactggagcgccac
aaccgcctctactacgtggaagatcgccccgagatcaccgacgccgaatacgatctcctc
ttccgcgaactggtggacctggaaacgcggttccccgacctggacgcccccgactccccg
acgcaacgggtgggcggcgcgcccctggacaagttcgagcaggttacccaccgcatcccc
atgctctccctggaaaacgccttcacggacgccgagatcgccgacttcgacgaccgggtc
aaacgcttcctggggctccacggcgacgtggaaatcgattacgtctgtgaacccaagatg
gacgggcttgccgtggaactggtctacgaacgcggcgtcctcaccgtcggctccacccgg
ggcgacggcgtggtgggggagaacgtcacccacaacctgaagaccgtcagggacatcccc
ctcaggctccggtgcgagcagccgccggaattgctggaggtgcgaggcgaggtttacctt
cccctggccccgttccagcgtctgaacgcccagcgggaggaggagggcgagccccccttt
gccaacccccgcaacgccgcggccggctccatccgccagttggactcccggatcacggcc
cggcggcccctggccatcttctgctacgcgccgggcgaggtccggggcgcctccttcgcg
gcacagaccgaatttctcgaccggatcggcgaatgggacctgccggtcaacccgctgatc
cggccggtgaagggagtggcggagatcctcgcctactaccgggagatgaccgaacgccgc
gactccctcccctacgagatcgacggcgtggtggtcaaggtggattcctttgccctccag
cgggagctgggcgaaaagagccgctccccccgctgggccgtggccgtcaagttcccgccc
cggcaggcggtgaccctggtggaggacatcgttccctcggtggggcgcaccggggtgatc
acccccacggcgcacctcaggcccgtggaggtttccggcgtcaccgtctcccgcgccacc
ctccacaactgggaggagatggagcgcaaggacatccgcatcggcgacaccgtggtgatc
gagcgggccggcgacgtgatcccggccgtggtcaaggtcctggccgaaaagcgttctggc
agcgaacgccccctccccatcccggccgcctgccctgaatgcggctccgaggtggtgaag
atccccggcgaggtggcggtccgctgcatggggctctcgtgcccggcccagatccgcgaa
tccatcatccacttcgcctcccgcgatgccatggacatggaggggctgggcgaaaaatac
atcgagcaactcctgcggctgggcctggtgaagaacgtggccgacctctacaccctcacc
agagaccggttcatgcagttcgaacgcatgggggacaagctggccgaaaacctcctgaac
gccatcgaggccagcaagcaacgggagctctcccgcttcatcttcgccctgggcatccgc
cacgtgggggaacgcacggcaaaactcctggccggcgccttcggcagcatcgagaacctg
gagcgggccaccgaggaggaactcctctccatccgcgaggtgggcccccaggtggcccgc
agcatcatcacctttttccgcaacgaggggaaccgggagaccgtccggcggatgatcgag
gtcggggtccggcccacggtggaggagaaaaaggtggggggccgcttcaccggcaagacc
ttcgtcttcaccggggcgctcacccgcttcagccgccctgaggcccagaagatggtggag
aaggaggggggccacgcggccggctccgtctcgaaaaagaccgactacgtggttgccggc
gccgaggccggcagcaagctggacaaggcccgccaactgggggtcagggtgctgaccgag
gatgaattcctggcaatgctggaggagggatag
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