Geitlerinema sp. PCC 7407: GEI7407_0220
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Entry
GEI7407_0220 CDS
T02366
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gei
Geitlerinema sp. PCC 7407
Pathway
gei03030
DNA replication
gei03410
Base excision repair
gei03420
Nucleotide excision repair
gei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GEI7407_0220
03410 Base excision repair
GEI7407_0220
03420 Nucleotide excision repair
GEI7407_0220
03430 Mismatch repair
GEI7407_0220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gei03032
]
GEI7407_0220
03400 DNA repair and recombination proteins [BR:
gei03400
]
GEI7407_0220
Enzymes [BR:
gei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GEI7407_0220
DNA replication proteins [BR:
gei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GEI7407_0220
DNA repair and recombination proteins [BR:
gei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GEI7407_0220
NER (nucleotide excision repair)
GGR (global genome repair) factors
GEI7407_0220
MMR (mismatch excision repair)
DNA ligase
GEI7407_0220
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GEI7407_0220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
RNA_ligase
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
AFY64725
UniProt:
K9S3I2
LinkDB
All DBs
Position
complement(250660..252714)
Genome browser
AA seq
684 aa
AA seq
DB search
MTVTPQVEQRIRQLQQQLQHASYAYYVLDNPVMEDSVYDRLYRELQDLETQYPELIMPDS
PTQRVGERPATQFQSVQHQVPLYSLENAFNGDELQAWDQRWRRLAPPGAIATYVCELKID
GSAIALTYENGVLVRGATRGDGVAGEEITQNIKTIRSIPLKLQGDNPPPRVEVRGEAFLP
LDVFDQINQEREQAGEARFANPRNAAAGTLRQLDSRVVAQRRLDFFAYTVHFPGLAEEEQ
PLDERSQWAALEWLHQVGFRVNPERERCASLAEVQAYCDRWFTARQELAYMTDGVVIKLN
DFGLQEQLGFTQKFPRWAIALKYPAEEAPTQIDRIVFQVGRTGAITPVAEFQPVHLAGTI
VSRATLHNGDRIAELDLHLGDTIIVRKAGEIIPEVVRVMTDLRPEAALPVQMPTHCPECG
QPVIKPSDEAVTRCINASCPAILRGALIHWASRDALDINGVGEKLVQQLVDRQVVQCVAD
LYDLSVDDFQQLERMGQKSAEKLVKAIADSKAKPWSRVLYGLGIRHVGSVNAQTIAENFP
SVEELSSAESGAIAAIYGIGPEIAQAVAQWFQIPANQDLIRRLQAAGLSLAQTVVSTAPP
AQAALFAGKTFVLTGTLPTLSRDEAKALIQQAGGKVTGSVSAKTDYLVVGEDAGSKLTKA
IALGVAQLSEADLLALLNAASSQP
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtgacggttactccccaggttgagcagcggattcggcaacttcagcagcagctccagcac
gccagctacgcatactatgtgctggacaaccccgtgatggaagacagcgtctacgatcgc
ctgtaccgcgaactgcaagatctggagactcagtaccccgagctgatcatgccggatagc
ccgactcagcgagttggcgagcggcctgcgacccagtttcagtcggttcagcaccaggtg
ccgctctacagcctcgaaaatgcgttcaatggggacgagctgcaggcctgggatcagcgg
tggcggcggttggcgccaccgggggcgatcgcgacctacgtgtgcgagctcaaaattgac
ggttcggcgatcgcgctgacctacgaaaacggggttttggtgcggggggcaacgcgagga
gacggggtcgcaggcgaagaaatcacccaaaatatcaagaccattcgctcgattccgctg
aagctccaaggcgacaatccgccgccgcgggtcgaggtgaggggcgaggcgtttttgccc
ctcgatgtttttgaccaaattaaccaagagcgggaacaagctggcgaggcgcgctttgcc
aatcctcgcaatgccgccgcagggaccttgcggcagctagattcgcgggtggtggcccag
cgccgcctcgacttttttgcctatacggttcattttccgggtttggcggaggaggagcag
cctctggatgaacgcagtcaatgggccgcgctggagtggctgcaccaggtcggttttcgg
gtgaatccggagcgggagcgctgtgcgtcactggcggaggtgcaggcctactgcgatcgc
tggtttacggcgcgccaagagctggcctatatgaccgatggcgtggtgatcaagctgaat
gactttgggctccaggagcagctaggcttcacccaaaagtttcctcgctgggcgatcgcc
ctcaagtacccagcggaggaggctcccacccaaatcgatcgcattgtgtttcaggtgggg
cgcacgggggcgattacgccggtggcagagtttcagccggtgcacctggcggggacgatc
gtgtctcgggcgacgctccacaacggcgatcgcattgccgagctggacctccacctgggc
gacacgatcatcgtccgcaaggccggcgagattattcccgaagttgtgcgggtgatgaca
gatctgcgccccgaagcagcgctgccggtgcagatgccgacgcactgcccagagtgcggc
cagcccgtgatcaagccaagcgacgaagcggtgactcgctgcatcaatgcgtcttgtccg
gcgattttgcggggggcgctcattcactgggcgagccgggatgcgctggacatcaatggg
gtaggcgaaaagctggtgcagcagctggtggaccggcaggtggtgcagtgcgtggcggac
ctgtatgacctgagcgttgacgactttcagcagctggagcgcatgggccaaaagtccgca
gagaagctagttaaggcgatcgccgattcgaaagcaaagccctggtcgagggtgctctat
ggcttggggattcgccatgtgggcagcgtcaatgcccaaacaattgctgaaaattttccg
tcagtggaggagctttcgagtgctgagtcaggggcgatcgccgcgatctacggcatcggc
ccagaaattgcgcaggccgtagcgcaatggttccagattccggccaaccaggatttgatt
cgtcgactccaggcagccggtctttccctagcccaaaccgtcgtcagcactgcaccaccg
gctcaggctgccctcttcgcgggcaaaacctttgtcttgaccggcacgctgccgaccctg
agccgcgacgaagccaaggccttgattcagcaggcgggcggcaaggtaaccggatcggtc
agcgccaaaacggactacctcgtggtcggtgaggacgctggctccaagctaaccaaggcg
atcgccctcggcgttgcccagctgtccgaagcagatttgctggctcttctcaatgccgct
agctcacagccgtaa
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